Locus 6571

Sequence ID 3R_DroMel_CAF1
Location 17,306,491 – 17,306,583
Length 92
Max. P 0.888552
window10692

overview

Window 2

Location 17,306,491 – 17,306,583
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.49
Mean single sequence MFE -19.35
Consensus MFE -13.98
Energy contribution -14.53
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -2.05
Structure conservation index 0.72
SVM decision value 0.95
SVM RNA-class probability 0.888552
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17306491 92 + 27905053
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGCCGAAUUAGGCAAAAGGCGUAGUGCCCAUGGCCCACAGAUACAUAC--------A-
...(((((((.(((.....)))))))))).....(((.(((...(((......)))....(((.....))).)))))).............--------.- ( -21.00)
>DroGri_CAF1 80174 93 + 1
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGUUGAAUUAGCUAAAAGCCGAU--------GGCCAAAAGAUACAACCCAGCCAAAAA
...(((((((.(((.....))))))))))....(((((......((((.(((.((((........)--------))).....))).))))..))))).... ( -15.80)
>DroSim_CAF1 40802 92 + 1
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGCCGAAUUAGGCAAAAGGCGUAGUGCCCAUGGCCCACAGAUACAAAC--------A-
...(((((((.(((.....)))))))))).....(((.(((...(((......)))....(((.....))).)))))).............--------.- ( -21.00)
>DroEre_CAF1 40952 83 + 1
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGCCGAAUUAGGCAAAAGGC---------AUGGCCCACAGAUACCCAC--------A-
...(((((((.(((.....))))))))))..((((.((......(((......)))...)).)---------)))................--------.- ( -16.50)
>DroWil_CAF1 80599 88 + 1
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGUUGAAUUAGGCAAAAGGCAUAAGGCCGAUGGCCAAAAGAUUUG-------------
...(((((((.(((.....))))))))))....((((.(((...(((......)))....(((.....))).))))))).........------------- ( -19.10)
>DroAna_CAF1 39458 83 + 1
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGCUGAAUUAGGCAAAAGGCCUAAUGCCUAUGGCCUACAG------------------
...(((((((.(((.....)))))))))).....(((.((((..((...(((((((.....))))))))).))))))).....------------------ ( -22.70)
>consensus
AAAUAAUUGCACAAUUCAUUUGGUAAUUAGACAUGGCUCAUAAAGCCGAAUUAGGCAAAAGGCGUA_UGCC_AUGGCCCACAGAUACA_AC________A_
...(((((((.(((.....))))))))))....(((((.....))))).....(((....(((.....)))....)))....................... (-13.98 = -14.53 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:43 2006