| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,304,665 – 17,304,768 |
| Length | 103 |
| Max. P | 0.579825 |
| Location | 17,304,665 – 17,304,768 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -21.04 |
| Consensus MFE | -15.08 |
| Energy contribution | -15.44 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17304665 103 - 27905053 AUAUGUAUGUUGGCAAUUCGAAUAUAUAGGUUGCAAGUAAUAAUUUUCGCUGUGCAAAGAUUGGGAG-UUCCAUUAGCUGAAAUUGCCAAAAAUUGCAGGCAAA ...((((..((((((((((...........(((((((..(......)..)).)))))((..(((...-..)))....))).)))))))))....))))...... ( -21.10) >DroSec_CAF1 37342 104 - 1 AUAUAUAGGUUGGCAAUUCGAAUAUAGAGGUUGCAAGUAAUAAUUUUCCCUGUGCAAAGAUUGGGAGAUUCCAUUAGCUGAAAUUGCCAAAAAUUGCAGCCAAA ...((((..((((....)))).))))..((((((((.((((...((((((.((......)).))))))....))))((.......))......))))))))... ( -21.40) >DroSim_CAF1 38981 104 - 1 AUAUAUAUGUUGGCAAUUCGAAUAUAGAGGUUGCAAGUAAUAAUUUUCCCUGUGCAAAGAUUGGGAGAUUCCAUUAGCUGAAAUUGCCAAAAAUUGCAGCCAAA .....((((((.(.....).))))))..((((((((.((((...((((((.((......)).))))))....))))((.......))......))))))))... ( -22.40) >DroEre_CAF1 39248 81 - 1 -----------------------AUCGAGGUUGCAAGUAAUAAUUUUCCCUGUGCAAAGAUUGGGAAUUUUCAUUAGCUGAAAUUGCCAAAAAUUGCAGCCAAA -----------------------.....((((((((.((((((..(((((.((......)).)))))..)).))))((.......))......))))))))... ( -20.40) >DroYak_CAF1 42190 80 - 1 ------------------------GCGAGGUUGCAAGUAAUACUUUUCCGUGUGCAAAGAUUAGGAAUUUUCAUUAGCUGAAAUUGCCAAAAAUUGCAGCCCAA ------------------------..(.(((((((((((.(((......))))))........((...(((((.....)))))...)).....))))))))).. ( -19.90) >consensus AUAU_UA_GUUGGCAAUUCGAAUAUAGAGGUUGCAAGUAAUAAUUUUCCCUGUGCAAAGAUUGGGAGAUUCCAUUAGCUGAAAUUGCCAAAAAUUGCAGCCAAA ............................((((((((.........(((((.((......)).))))).........((.......))......))))))))... (-15.08 = -15.44 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:42 2006