| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,300,673 – 17,300,768 |
| Length | 95 |
| Max. P | 0.826297 |
| Location | 17,300,673 – 17,300,768 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 72.14 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -8.99 |
| Energy contribution | -10.13 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17300673 95 + 27905053 CCAGUUCGGGCCAAGAGUACCUGCAGUGGGAGACCAAUGCACUGGGGAAAAUACACAACUUUACAACACAAAUAGGAAACU---GAAAUACUUAAUA-U (((((..((..(....)..)).(((.(((....))).))))))))...........................(((....))---)............-. ( -22.00) >DroSec_CAF1 33324 93 + 1 CCAGUUCGGGCCAAGAGUACCUGCAGUGGGAGACCGAUGCACUGGGGAAAACAUACAACUUUACAAUAGAAAUAGGAAACU---GAAAUAA--AACA-A (((((..((..(....)..)).(((.(((....))).))))))))...........................(((....))---)......--....-. ( -21.30) >DroSim_CAF1 34959 93 + 1 CCAGUUCGGGCCAAGAGUACCUGCAGUGGGAGACCGAUGCACUGGGGAAAACAUACAACUUUACAAUAGAAAUAGGAAACU---GAAAUAA--AACA-A (((((..((..(....)..)).(((.(((....))).))))))))...........................(((....))---)......--....-. ( -21.30) >DroEre_CAF1 35392 86 + 1 CCAGUUCGGGCCAAGAGUACCUGCAGUGGGAGUCCAAUGCACUGCGGAAA----ACAGCCCUA---GAGAAGUGGCAUAC---GAAUAAAA--AAUA-U (((.(((((((.........((((((((.(.......).))))))))...----...))))..---..))).))).....---........--....-. ( -21.76) >DroYak_CAF1 38186 93 + 1 CCAGUUUGGGCCAAGAGUACCUGCAGUGGGAGACCAAUGCACUGAGAAAAAAA-AAAACCUUA---CCGAAAUGGGAUACUAGGAAUACCA--AAUAAU ...((((((.((...((((((((((.(((....))).)))..((((.......-.....))))---.......))).)))).))....)))--)))... ( -24.20) >DroAna_CAF1 34286 87 + 1 CAAGUCCAGACCAAGAAAAGCUUCAGUGGGAGAGGAGUUCACAGGGAGAAAAAUAU---UUUUCAUAUUUAAUAAGA-CUU---GGAAUAA--AAA--- ((((((....((..(((...((((.......))))..)))...))((((((....)---)))))...........))-)))---)......--...--- ( -15.90) >consensus CCAGUUCGGGCCAAGAGUACCUGCAGUGGGAGACCAAUGCACUGGGGAAAAAAUACAACUUUACAACAGAAAUAGGAAACU___GAAAUAA__AAUA_U (((((..(((.........)))(((.(((....))).))))))))...................................................... ( -8.99 = -10.13 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:41 2006