| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,299,830 – 17,299,945 |
| Length | 115 |
| Max. P | 0.744278 |
| Location | 17,299,830 – 17,299,945 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.47 |
| Mean single sequence MFE | -18.96 |
| Consensus MFE | -5.58 |
| Energy contribution | -7.86 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17299830 115 - 27905053 AUUAAACUAUAAAACAAGUUUAAGUAAACACCAUCUCCUAGUUUUAAUCAAACACGGAACAAGUUGC-----UAAAUUUAAGCUUUAAUUAGCAUAUAUCAAGGGUGUUACUUGGGCAGA .................((((((((((.((((...(((..((((.....))))..)))......(((-----(((.............)))))).........))))))))))))))... ( -23.22) >DroSec_CAF1 32547 105 - 1 UAUAAACUAUAAAACUAGUUUAAGUAAACACCAUCUCGCAAUCUUAAUCAAACA---AACAAGUUGC-----UAGAUUUGAGCUUAAAUUAGCAUAUAUCAAUGGUGUUACUU------- ..(((((((......)))))))(((((.((((((...((((.(((.........---...)))))))-----..(((.((.(((......))).)).))).))))))))))).------- ( -22.70) >DroSim_CAF1 34153 105 - 1 AAUAAACUAUAAAUCUAGUUUAAGUAAACACCAUCUCGCAAUCUUAAUCAAACA---AACAAGUUGC-----UAGAUUUAAGCUUAAAUUAGCAUUUAUCAAGGGUGUUACUU------- ..(((((((......)))))))(((((.((((((((.((((.(((.........---...)))))))-----.))))....(((......)))..........))))))))).------- ( -22.30) >DroEre_CAF1 34558 97 - 1 CAUAAACUAUGAAACUGGUUUAAGUAAACAC----------------UCAAACAUGAAACAAGAUAUUCAAUUAGAUUUGAGCUUAAGUUAGCAUAUAUCAAGGUCGUUAUUU------- ..(((((((......))))))).........----------------......((((.....(((((((((......))))(((......)))..)))))....)))).....------- ( -12.00) >DroYak_CAF1 37341 113 - 1 AAUAAAGUUUGAAACUGGUUUAAGUAAACACAAUCUGUAGGUCUUAAGCAAACAUAAACCAAGAUGUUCAAUUAGAUAAAAGCUUAAAUUAGCAUAUAUCAAGGUCGUUAUCU------- ......(((((......(((((((...(((.....)))....))))))).....)))))..(((((.....((.((((...(((......)))...)))).)).....)))))------- ( -14.60) >consensus AAUAAACUAUAAAACUAGUUUAAGUAAACACCAUCUCGCAAUCUUAAUCAAACA___AACAAGUUGC_____UAGAUUUAAGCUUAAAUUAGCAUAUAUCAAGGGUGUUACUU_______ ..(((((((......)))))))(((((.((((..................(((.........))).........(((.((.(((......))).)).)))...)))))))))........ ( -5.58 = -7.86 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:40 2006