Locus 6567

Sequence ID 3R_DroMel_CAF1
Location 17,298,493 – 17,298,585
Length 92
Max. P 0.899858
window10688

overview

Window 8

Location 17,298,493 – 17,298,585
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -36.40
Consensus MFE -28.48
Energy contribution -28.95
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 1.01
SVM RNA-class probability 0.899858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17298493 92 - 27905053
ACGUGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAA-UCGCAUAC----------AAGUAU----UCGUAUUCGGAUUUGGACUCGGAAUCGGA--
..(((.(((....((((.((((((..(.((...)).)..))))))))))-.))).)))----------.....(----(((.((((.((.......)).))))))))-- ( -32.70)
>DroSec_CAF1 31209 106 - 1
ACGGGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAA-UCGCAUACGGAUUCCUACGAGUAUUCAUUCGUAUUCGGAUUUGGACUCGGAAUCGAA--
.((...(((....((((.((((((..(.((...)).)..))))))))))-.)))...))((((((...((((....(((((....)))))....))))))))))...-- ( -41.70)
>DroSim_CAF1 32814 102 - 1
ACGGGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAA-UCGCAUACGGAUUCGUAUGAGUAU----UCGUAUUCGGAUUUGGACUCGGAAUCGAA--
.((((...((((.((((.((((((..(.((...)).)..))))))))))-))))...((((((((((((.....----.))))..))))))))..))))........-- ( -39.30)
>DroEre_CAF1 33205 91 - 1
ACGGGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAAUUCGUAUUCGCAUU------GGGAU----UCGUAUUCGGAUUUGGACUCGCA--------
.((((.((((((.((((.((((((..(.((...)).)..)))))))))).)))....))).((------.((((----(((....))))))).))))))..-------- ( -35.50)
>DroYak_CAF1 35974 90 - 1
ACGGGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAA-UCGCAUUCGGAUU------UGGAU----UCGUAAUCGGAUGUGGACUCGGA--------
........((((.((((.((((((..(.((...)).)..))))))))))-)))).((((..(.------.(.((----(((....))))).)..)..))))-------- ( -35.60)
>DroAna_CAF1 32255 86 - 1
ACGGGGGCGUGACUUCCACAGGCUUUAUGCUUGGCUGGGGGCCUGGGAA-U-----ACGGA-----------------CCGGACCCGGACCAGGGCCCGAAAUCGGAAU
....(((((((..((((.((((((((..((...))..))))))))))))-)-----))((.-----------------(((....))).))...))))........... ( -33.60)
>consensus
ACGGGGGCGUGACUUCCACAGGCUUUCUGCUUGGCUGGGGGCCUGGGAA_UCGCAUACGGAUU______AGUAU____UCGUAUUCGGAUUUGGACUCGGAAUCG_A__
.((((..(((((.((((.((((((..(.((...)).)..)))))))))).))))........................(((....)))....)..)))).......... (-28.48 = -28.95 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:39 2006