Locus 6566

Sequence ID 3R_DroMel_CAF1
Location 17,297,699 – 17,297,809
Length 110
Max. P 0.753012
window10687

overview

Window 7

Location 17,297,699 – 17,297,809
Length 110
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 74.38
Mean single sequence MFE -22.84
Consensus MFE -17.22
Energy contribution -17.09
Covariance contribution -0.14
Combinations/Pair 1.27
Mean z-score -0.89
Structure conservation index 0.75
SVM decision value 0.48
SVM RNA-class probability 0.753012
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17297699 110 + 27905053
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCGGCACUGAGGCGUGUGGCUUAACUUUU-UUUUCGGAUCUAAGCGCU--UCACUCAAGGAAACUUUUUUUCGGAU
((((....((((((........))))))....((((....))))((((((((.(((.((.......-......)).))).)))))--)))...(((....)))......)))) ( -26.42)
>DroVir_CAF1 84912 105 + 1
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCAGCAUUGAGGCGUGC-AUAAAACGCUU-UUCGCAGACUCGAAAACC--UGACUAGAUGAGAAUUUAUUUA----
.(((.(((((((..(((((.............)))))...((...(((((((..-.....))))))-)..)).............--))))).)).).)).........---- ( -22.92)
>DroSec_CAF1 30476 91 + 1
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCGGCACUGAGGCGUGUGGCUUAACUUUU-UUUUCGGAUCUAAGCACUAUUCAU---------------------U
((((...((((((.(((((.............)))))((.((((......)))).))))))))...-.....))))...............---------------------. ( -20.22)
>DroSim_CAF1 32046 92 + 1
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCGGCACUGAGGCGUGUGGCUUAACUUUUUUUUUCGGAUCUAAGCACUAUUCAU---------------------U
((((..........(((((.............)))))((.((((......)))).))...............))))...............---------------------. ( -19.92)
>DroYak_CAF1 35237 90 + 1
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCAGCACUGAGGCGUGUGGCCGAGCUUUU--UUUCGGAUCUAAGCACCAUGCAU---------------------U
...(((((((...((((((.............))))))....))))))).(((((((((((.....--.))))).........))))))..---------------------. ( -25.42)
>DroAna_CAF1 31393 98 + 1
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGUCGCGGCACUGAGGCGUGCGGCAAA-UGUUU-UUUUCGGAUAUGAGCACGAAAUAC--UAUGAAAA-----------G
...((((((((..((((((.............))))))..).)))))))(((((.....(-(((((-.....))))))..)))))......--........-----------. ( -22.12)
>consensus
AUCCUUCAGUUAAUGGCACUUAAUUAACAACUGUGCCGCGGCACUGAGGCGUGUGGCUUAACUUUU_UUUUCGGAUCUAAGCACUAUUCAC_____________________U
((((..........(((((.............)))))((.((((......)))).))...............))))..................................... (-17.22 = -17.09 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:38 2006