Locus 6565

Sequence ID 3R_DroMel_CAF1
Location 17,293,995 – 17,294,098
Length 103
Max. P 0.743574
window10686

overview

Window 6

Location 17,293,995 – 17,294,098
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.45
Mean single sequence MFE -29.45
Consensus MFE -19.42
Energy contribution -19.12
Covariance contribution -0.30
Combinations/Pair 1.30
Mean z-score -1.94
Structure conservation index 0.66
SVM decision value 0.46
SVM RNA-class probability 0.743574
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17293995 103 - 27905053
UGGCGUC-UUUGAUUGGCGUCAAUUAA---GAGGGCCUCAAG-UCCGGCAAUUACCCAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAGCGAAG
(((((((-.......))))))).....---..((((.....)-))).((.................(((((((....))))))).((((......))))...)).... ( -30.00)
>DroPse_CAF1 64338 102 - 1
UGGUGUC-UUUGAUUGGCAUUAAUUA----GAGAGCCACAGA-AUCGGCAAUUAUAUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCUGAAACGAUG
..((.((-...(((((((((......----....(((.....-...))).................(((((((....))))))).....))))))))).)).)).... ( -27.10)
>DroWil_CAF1 65679 99 - 1
--CCAUCUUUUGAUUGCCAUCAAUUAG----AUACAUUC-GC-AUUGGCAAUUAUCUAUGUUUAUAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUUA-AAAAGAUG
--.((((((((((((((((((...(((----(((.(((.-((-....)))))))))))........(((((((....)))))))..)))).)).)))).-)))))))) ( -29.90)
>DroYak_CAF1 31394 103 - 1
UGGCGUC-UUUGAUUGGCGUCAAUUAG---GAGGGCCUGAAG-UCCGGCAAUUACCUAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCAAAGCGAUG
(((((((-.......)))))))..(((---(...(((.(...-.).))).....))))(((((...(((((((....))))))).((((......)))).)))))... ( -32.50)
>DroAna_CAF1 27630 107 - 1
UGGCUUC-UUUGAUUGGCGUCAAUUAGUGCGAAGCCCGAAAGAUUCGGCAAUUAUAUGUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAACGACU
.((((((-.(((((((....)))))))...))))))(....)..(((...................(((((((....))))))).((((......))))....))).. ( -30.10)
>DroPer_CAF1 65248 102 - 1
UGGUGUC-UUUGAUUGGCAUUAAUUA----GAGAGCCACAGA-AUCGGCAAUUAUAUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCUGAAACGAUG
..((.((-...(((((((((......----....(((.....-...))).................(((((((....))))))).....))))))))).)).)).... ( -27.10)
>consensus
UGGCGUC_UUUGAUUGGCAUCAAUUAG___GAGAGCCUCAAG_AUCGGCAAUUAUAUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAACGAUG
...((((.(((((((((((.((............(((.........))).................(((((((....)))))))....))))))))))..))).)))) (-19.42 = -19.12 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:37 2006