Locus 6564

Sequence ID 3R_DroMel_CAF1
Location 17,292,808 – 17,292,900
Length 92
Max. P 0.500000
window10685

overview

Window 5

Location 17,292,808 – 17,292,900
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 94.07
Mean single sequence MFE -18.18
Consensus MFE -15.42
Energy contribution -15.42
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.85
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17292808 92 + 27905053
UACCCAUACCUGGGUGCUUCCCUAUAGCCAUACCCAGCGAUCCCAUCCCAUACCAUCCUUCAUCUGCUUGUGGGCAAUUAAUCUGGGUGAGC
((((((...(((((((((.......)))...)))))).(((.....((((((................))))))......)))))))))... ( -23.69)
>DroSec_CAF1 25594 86 + 1
UACCCAUACC------CAUCCAUAUAGCCAUACCCAGCGAUCCCAUCCCAUACCAUCCUUCAUCUGCUUGUGGGCAAUUAAUCUGGGUGAGC
..........------..........((..(((((((.........((((((................))))))........))))))).)) ( -15.42)
>DroSim_CAF1 26524 86 + 1
UACCCAUACC------CAUCCCUAUAGCCAUACCCAGCGAUCCCAUCCCAUACCAUCCUUCAUCUGCUUGUGGGCAAUUAAUCUGGGUGAGC
..........------..........((..(((((((.........((((((................))))))........))))))).)) ( -15.42)
>consensus
UACCCAUACC______CAUCCCUAUAGCCAUACCCAGCGAUCCCAUCCCAUACCAUCCUUCAUCUGCUUGUGGGCAAUUAAUCUGGGUGAGC
..........................((..(((((((.........((((((................))))))........))))))).)) (-15.42 = -15.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:36 2006