Locus 6563

Sequence ID 3R_DroMel_CAF1
Location 17,291,588 – 17,291,679
Length 91
Max. P 0.599711
window10684

overview

Window 4

Location 17,291,588 – 17,291,679
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 80.88
Mean single sequence MFE -26.37
Consensus MFE -17.08
Energy contribution -17.25
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.65
SVM decision value 0.13
SVM RNA-class probability 0.599711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17291588 91 + 27905053
GCUGG--UU----GGACAAUGUGCCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC---CAGGUACCACCACCGGCCCAG
(((((--(.----((.....(((((....(((((..((((.....))))..)))))......((.........)).---..)))))..)))))))).... ( -30.20)
>DroPse_CAF1 61816 89 + 1
UCUGCCAAU-----GGUUGUGUGGCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC---CAGGUAGGCCA---GUCCCAG
((((((..(-----((((((.(((.....(((((..((((.....))))..)))))......)))..)))))))..---..))))))...---....... ( -29.10)
>DroEre_CAF1 26124 84 + 1
GCUGG--UU----GGACAAUGUGCCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC---CAGGUACCACAA-------GG
.((((--((----((....((.....)).(((((..((((.....))))..)))))...............)))))---))).........-------.. ( -28.20)
>DroYak_CAF1 29067 87 + 1
GCUGG--AU----GGACAAUGUGCCACAACGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGACCACCAGGUACCACAA-------GG
.((((--.(----((.....((......))((((..((((.....))))..))))....................))))))).........-------.. ( -23.60)
>DroAna_CAF1 25078 86 + 1
-CAGG--UUUUUAUCCCAGUGUCCCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC---CAGGUACCAAAA-------G-
-..((--(..........(((...)))..(((((..((((.....))))..)))))..............(((...---..))))))....-------.- ( -20.30)
>DroPer_CAF1 62719 89 + 1
UCUGCCAAU-----GGCUGUGUGGCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC---CAGGUAGGCCA---GUCCCAG
.(((....(-----((((...........(((((..((((.....))))..)))))..............(((...---..))).)))))---....))) ( -26.80)
>consensus
GCUGG__AU____GGACAAUGUGCCACAAUGGCGUGCGUGUUCAACACGUGUGCUAAUCUCAUCAAAACAACCGAC___CAGGUACCACAA_______AG
.............................(((((..((((.....))))..)))))..............(((........)))................ (-17.08 = -17.25 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:35 2006