| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,290,999 – 17,291,091 |
| Length | 92 |
| Max. P | 0.878045 |
| Location | 17,290,999 – 17,291,091 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 88.65 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -17.02 |
| Energy contribution | -17.03 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.878045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17290999 92 + 27905053 UAUUA-UUAAUUGGAGAGCAGGGUAUAUACCACGCUCUCCAAUUUUCUUUUUAUAUUUUAAAGAGCU-UUUGAAUAAGAAUAUUUGGUUUUCAA .....-..(((((((((((..(((....)))..)))))))))))..(((((((.....)))))))..-.(..((((....))))..)....... ( -24.60) >DroSec_CAF1 23730 94 + 1 UAUUAGUUAGUUGGAAAGUAGGGUAAAUACCACGCUAUCUAAUUUUCUAUUUCGAUUUUGAAGAGGUCUUUAAAUAAGAAUAUUUAGUUUUCAA ...(((..(((((((.(((..(((....)))..))).)))))))..))).(((...(((((((....)))))))...))).............. ( -20.40) >DroSim_CAF1 24696 94 + 1 UAUUAGUUAGUUGGAAAGUAGGGUAUAUACCACGCUAUCUAAUUUUCUAUUUCGAUUUUGAAGAGGUCUUCAAAUAAGAAUAUUUAGUUUUCAA ...(((..(((((((.(((..(((....)))..))).)))))))..))).(((...(((((((....)))))))...))).............. ( -22.60) >consensus UAUUAGUUAGUUGGAAAGUAGGGUAUAUACCACGCUAUCUAAUUUUCUAUUUCGAUUUUGAAGAGGUCUUUAAAUAAGAAUAUUUAGUUUUCAA ...(((..(((((((.(((..(((....)))..))).)))))))..))).(((...(((((((....)))))))...))).............. (-17.02 = -17.03 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:35 2006