Locus 6560

Sequence ID 3R_DroMel_CAF1
Location 17,279,091 – 17,279,205
Length 114
Max. P 0.536286
window10680

overview

Window 0

Location 17,279,091 – 17,279,205
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 83.59
Mean single sequence MFE -21.10
Consensus MFE -12.25
Energy contribution -13.03
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.49
Structure conservation index 0.58
SVM decision value 0.01
SVM RNA-class probability 0.536286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17279091 114 - 27905053
AACGUUAUAAGCUGAGAAAACUGAAAAUAUAAAUCUGGUCUAAUUGGAACAAAAAAGCAGCAAAGUAAAAUGUCUUGUGAACUGUGAUACACAUUUUACAGAUCAUAACAAGAU
..........((((((....))...........((..((...))..)).........))))..........(((((((((.((((((........)))))).))...))))))) ( -18.70)
>DroSec_CAF1 11808 101 - 1
AACGUUAUGAGCUGAGAAAACUAAAAAUGUAAAUUUGGUGUA----------AAAAGCAGGAAAGUG---UAUCUUGGGAACUGUGAUACAAAUUUUACAGAUCAUAACAAGAU
...((((((((((......((((((........))))))...----------...))).((((..((---((((..(....)...))))))..)))).....)))))))..... ( -23.50)
>DroSim_CAF1 12075 101 - 1
AACGUUAUGAGCUGAGAAAACUCAAUAUGUAAAUGUGGUGUA----------AAGAGCAGGAAAGUG---UAUCUUGGGAACUGUGAUACAAAUUUUAAAGAUCAUAACAAGAU
...(((((((((((((....))).((((....))))......----------...))).((((..((---((((..(....)...))))))..)))).....)))))))..... ( -21.10)
>consensus
AACGUUAUGAGCUGAGAAAACUAAAAAUGUAAAUCUGGUGUA__________AAAAGCAGGAAAGUG___UAUCUUGGGAACUGUGAUACAAAUUUUACAGAUCAUAACAAGAU
...(((((((.(((.(((((((..((((....))))))).................((((..(((........))).....))))........)))).))).)))))))..... (-12.25 = -13.03 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:32 2006