Locus 6557

Sequence ID 3R_DroMel_CAF1
Location 17,266,311 – 17,266,429
Length 118
Max. P 0.627918
window10675

overview

Window 5

Location 17,266,311 – 17,266,429
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.26
Mean single sequence MFE -25.40
Consensus MFE -19.40
Energy contribution -19.72
Covariance contribution 0.32
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value 0.19
SVM RNA-class probability 0.627918
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17266311 118 - 27905053
--UUUGCCGAUUUGUGCACGUCGCCAAUUUGCAUACGAAAUUUACUCGAAAUUAUUUCGAUAUUUAUUAAUUUUCGAUGCGAUCAUUUUCAUAAAUUUCCAAGCCAAAGUCGGCUGCUCU
--...((((((((..((.............((((.(((((.(((.(((((.....))))).......))).)))))))))((......))............))..))))))))...... ( -25.00)
>DroSec_CAF1 62895 118 - 1
--UUUGCCGACUUGUGCACGGCGCCAAUUUGCAUACGAAAUUUACUUAAAAUUAUUUCGAUAUUUAUUAAUUUUCGAUGCGAUCAUUUUCAUAAAUUUUCAAGCCAAAGUCGGCUGCUCU
--...(((((((((....)(((........((((.(((((.(((..(((((((.....))).)))).))).)))))))))((..((((....))))..))..))).))))))))...... ( -27.60)
>DroSim_CAF1 65625 118 - 1
--UUUGCCGAUUUGUGCACGGCGCCAAUUUGCAUACGAAAUUUACUCGAAAUUAUUUCGAUAUUUAUUAAUUUUCGAUGCGAUCAUUUUCAUAAAUUUCCAAGCCAAAGUCGGCUGCUCU
--...(((((((((....)(((........((((.(((((.(((.(((((.....))))).......))).)))))))))((......))............))).))))))))...... ( -26.20)
>DroYak_CAF1 85589 118 - 1
--UUUGUGGAUUUGUGCACGGCGCCAAUUUGCAUACGAAAUUUACUCGAAAUUAUUUCGAUAUUUAUUAAUUUUCGAAGCGAUUAUUUUCAUAAAUUUCCAAGCCAAAGUCUGCUGCUCU
--...(..((((((....)(((((......))....((((((((.....(((..((((((.(((....)))..))))))..))).......))))))))...))).)))))..)...... ( -21.50)
>DroAna_CAF1 52918 120 - 1
UAUUUGCAGAUUUGUGCACGGCGCCAAUUUGCAUACGAAAUUUACUCGAAAUUAUUUCGAUAUUUAUUAAUUUUCGAAGCGAUCAUUUUCAUAAAUUUGGAACUGGAAGCCGGUCGAUCU
....((((((((.((((...)))).))))))))..((((((............))))))..............((((.((..(((.(((((......))))).)))..))...))))... ( -26.70)
>consensus
__UUUGCCGAUUUGUGCACGGCGCCAAUUUGCAUACGAAAUUUACUCGAAAUUAUUUCGAUAUUUAUUAAUUUUCGAUGCGAUCAUUUUCAUAAAUUUCCAAGCCAAAGUCGGCUGCUCU
.....((((((((((((...))))....((((((.(((((.(((.(((((.....))))).......))).)))))))))))........................))))))))...... (-19.40 = -19.72 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:27 2006