Locus 6556

Sequence ID 3R_DroMel_CAF1
Location 17,264,569 – 17,264,678
Length 109
Max. P 0.603801
window10674

overview

Window 4

Location 17,264,569 – 17,264,678
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.37
Mean single sequence MFE -27.73
Consensus MFE -23.61
Energy contribution -23.58
Covariance contribution -0.03
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value 0.14
SVM RNA-class probability 0.603801
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17264569 109 + 27905053
UCCAAACUGGUUCUGGGCCCGCUCUCUCACAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCG-----------
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))......----------- ( -25.30)
>DroSec_CAF1 61181 109 + 1
UCCAAACUGGUUCUGGGCCCGCUCUCUCGCAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCG-----------
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))......----------- ( -25.60)
>DroSim_CAF1 63946 109 + 1
UCCAAACUGGUUCUGGGCCCGCUCUCUCGCAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCG-----------
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))......----------- ( -25.60)
>DroEre_CAF1 62951 109 + 1
UCCAAACUGGUUCUGGGCCCGCUCUCUCACAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCG-----------
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))......----------- ( -25.30)
>DroYak_CAF1 83962 109 + 1
UCCAAACUGGUUCUGGGCCCGCUCUCUCACAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCC-----------
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))......----------- ( -25.30)
>DroAna_CAF1 51370 118 + 1
UCCGAACUGGUUUGGGCCCAGCU--CCGGCAACUAAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCGGGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCGGCCAUGCGGAU
((((...((((..((((.((((.--((((((((......))...(((((((....)))))))......))))))))))...((....)).............)).))..))))..)))). ( -39.30)
>consensus
UCCAAACUGGUUCUGGGCCCGCUCUCUCACAACUUAGUUGUAAUUGCAGUCCUUUGAUUGCAUUUGUGUGCCAAGCUGAAUUGUUUACAUUUAUCAUAAUCAGCACUCG___________
......((((((.(((((.(((......(((((...)))))...(((((((....)))))))...))).)))((((......))))........)).))))))................. (-23.61 = -23.58 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:26 2006