Locus 6555

Sequence ID 3R_DroMel_CAF1
Location 17,263,203 – 17,263,308
Length 105
Max. P 0.591585
window10673

overview

Window 3

Location 17,263,203 – 17,263,308
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.47
Mean single sequence MFE -19.75
Consensus MFE -16.85
Energy contribution -16.80
Covariance contribution -0.05
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.12
SVM RNA-class probability 0.591585
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17263203 105 - 27905053
UUAGUCGGACCCCCCCUCCACACUU---------------UUUGGCUUGAUCCACCUCUGGAUGACAUUAAGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
...((((((.......)))......---------------.........(((((....)))))))).....(((...((((.((((......))))))))...))).............. ( -19.80)
>DroSec_CAF1 59798 103 - 1
UUAGUCGGACCC-CCCUCCACACUU----------------UUGGCUUGAUCCACCUCUGGAUGACAUUAAGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
...((((((...-...)))......----------------........(((((....)))))))).....(((...((((.((((......))))))))...))).............. ( -20.30)
>DroSim_CAF1 62569 103 - 1
UUAGUCGGACCC-CCCUCCACACUU----------------UUGGCUUGAUCCACCUCUGGAUGACAUUAAGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
...((((((...-...)))......----------------........(((((....)))))))).....(((...((((.((((......))))))))...))).............. ( -20.30)
>DroEre_CAF1 61592 118 - 1
UUAGUUGGAGCC-CCCUCCACACUUUCCUGGCCCCUCUU-UUUGCCCCGAUCCACCUCUGGAUGACAUUAGGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
...(((((((((-................(((.......-...)))...(((((....))))).......)))))).((((.((((......))))))))...))).............. ( -22.40)
>DroYak_CAF1 82641 119 - 1
UUAGUUGGACCC-CCCUCCACACUUUCCUGGCCCCUCUUGUUUGCCUCGAUCCACCUCUGGAUGACAUUAAGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
..(((((((...-...)))).))).....(((...........)))((.(((((....)))))))......(((...((((.((((......))))))))...))).............. ( -20.30)
>DroAna_CAF1 49982 101 - 1
UUAGUUGGUCUC-CC--CCACGCCC----------------UUGCUCCAAUCUACCUUCGGCUGACAUUAAGCUUCAUCAGACAUUCAACUCGAUGCUGAAUUAGCAUACAAAUUACACA
...((..(((..-..--........----------------..................)))..)).....(((...((((.((((......))))))))...))).............. ( -15.41)
>consensus
UUAGUCGGACCC_CCCUCCACACUU________________UUGCCUCGAUCCACCUCUGGAUGACAUUAAGCUUCAUCAGACAUUCAACCCGAUGCUGAAUUAGCAUACAAAUUACACA
...((((((.......)))..............................((((......))))))).....(((...((((.((((......))))))))...))).............. (-16.85 = -16.80 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:25 2006