Locus 6553

Sequence ID 3R_DroMel_CAF1
Location 17,259,998 – 17,260,118
Length 120
Max. P 0.510067
window10668

overview

Window 8

Location 17,259,998 – 17,260,118
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.77
Mean single sequence MFE -43.60
Consensus MFE -35.28
Energy contribution -37.40
Covariance contribution 2.12
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.510067
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17259998 120 - 27905053
UGAGGGGGUCUGUAUGGCCCUCGACCAACUGCUAUUGGUCCUCUGGUUAGCUCUCCCUCUCUCCAUCUCUCUCUUUUCUGCUGGCACGCCCCCUUGGCGAGAGCGAGGCGGCGUUUCCAA
.(((((((...((.(((((...((((((......))))))....)))))))...)))))))....................(((.(((((.(((((.(....)))))).)))))..))). ( -44.70)
>DroSec_CAF1 56605 119 - 1
UGAGGGGGUCUGUAUGGCCCUCGACCAACUGCUAUUGGUCAUCUGG-UAGCUCUCCCUCUCUCCGUCUCUCUCUUUUCGGCUGGCACGCCCCCUUGGCGAGAGCGAGGCGGCGUUUCCAA
...(((((((.....)))))))((((((......))))))...(((-.(((.((.((((.(((.(((..((.......))..))).((((.....)))).))).)))).)).))).))). ( -45.60)
>DroSim_CAF1 58636 119 - 1
UGAGGGGGUCUGUAUGGCCCUCGAACAACUGCUAUUGGUCCUCUGG-UAGCUCUCCCUCUCUCCGUCUCUCUCUUUUCGGCUGGCACGCCCCCUUGGCGAGAGCGAGGCGGCGUUUCCAA
.(((((((((.....)))))..........(((((..(....)..)-))))....)))).(.(((((((.(((((.((((..((....))...)))).))))).))))))).)....... ( -44.60)
>DroEre_CAF1 58454 119 - 1
UGAGG-GGGCUGUAAUGCCCUCGCCCAACUGCCAUUGGUCCUCUGGUUAGCUCUCCCUCUCUCCGUCUCUCUCUUUUCGGUUGGCACGCCCCUUUGGAGAGAGCGAGGUGGCGUUUUUAA
.((((-(((..((...(((...(.((((......)))).)....)))..)).))))))).(.((..(((.((((((((((..((....))...)))))))))).)))..)).)....... ( -39.50)
>consensus
UGAGGGGGUCUGUAUGGCCCUCGACCAACUGCUAUUGGUCCUCUGG_UAGCUCUCCCUCUCUCCGUCUCUCUCUUUUCGGCUGGCACGCCCCCUUGGCGAGAGCGAGGCGGCGUUUCCAA
.(((((((...((.(((((...((((((......))))))....)))))))...))))))).(((((((.(((((.((((..((....))...)))).))))).)))))))......... (-35.28 = -37.40 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:20 2006