| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,259,265 – 17,259,379 |
| Length | 114 |
| Max. P | 0.553787 |
| Location | 17,259,265 – 17,259,379 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.08 |
| Mean single sequence MFE | -42.06 |
| Consensus MFE | -33.34 |
| Energy contribution | -33.62 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17259265 114 - 27905053 AUUGC---CCUCCGCCGGCUGC---ACUACAUACAUUUUUAUCGCCCGCUUUGCUCCACAGCUAUGAGCAGCGACUGGCCUGGGACUACCAGCGCCAGCUCCAGGAGCACUUCCAGGCAC ..(((---(....((.(((...---..................))).))..((((((...(((......)))(((((((((((.....)))).))))).))..))))))......)))). ( -40.40) >DroSec_CAF1 55873 114 - 1 AUUGU---CCUCCGCCGGCUGC---ACUACAUACAUUUUUAUCGCCCGCUCUGCUCCACAGCUAUGAGCAGCGUCUGGCCUGGGACUACCAGCGUCAGCUGCAGGAGCACUUCCAGGCAC ..(((---(....((.(((...---..................))).))..((((((...((.....)).(((.(((((((((.....)))).))))).))).))))))......)))). ( -37.70) >DroSim_CAF1 57903 114 - 1 AUUGU---CCUCCGCCGGCUGC---AUUACAUACUUUUUUAUCGCCCGCUCUGCUCCACAGCUAUGAGCAGCGUCUGGCCUGGGACUACCAGCGUCAGCUGCAGGAGCACUUCCAGGCAC ..(((---(....((.(((...---..................))).))..((((((...((.....)).(((.(((((((((.....)))).))))).))).))))))......)))). ( -37.70) >DroEre_CAF1 57720 114 - 1 ACUGU---CCGCCACCGGCUGC---ACUACAUACAUUUUUGUCGCCCGCUCUUCUCCACAGCUACGAGCAGCGACUGGCCUGGGACUACCAGCGCCAGCUGCAGGAGCACUUCCAGGCAC .....---..(((...(((.((---(.............))).))).((((((.......((.....)).(((.(((((((((.....)))).))))).))))))))).......))).. ( -40.32) >DroYak_CAF1 78722 114 - 1 ACUGU---CCUCCACCGGCUGC---CCUACAUACAUUUUUGUCGCCCGCGCUGCUCCACAGCUAUGAGCAGCGACUGGCCUGGGACUACCAGCGCCAGCUGCAGGAGCACUUCCAGGCAC ...((---.((((...(((.((---...............)).))).(((((((((.........)))))))(.(((((((((.....)))).)))))).)).)))).)).......... ( -40.66) >DroAna_CAF1 46337 120 - 1 GCUGUGCUCCUCCACCCGCUGCCGGAGUGCAUCCAUUCCUGUCGCCAGCCUUGCUCCAUAGCUACGAGCAACGGCUGGCCUGGGACUACCAGCGCCAGCUGCAGGAGCACUUCCAGGCGC (((((((((((.((...((((.(((((((....))))))....(((((((((((((.........)))))).)))))))((((.....)))).).)))))).)))))))).....))).. ( -55.60) >consensus ACUGU___CCUCCACCGGCUGC___ACUACAUACAUUUUUAUCGCCCGCUCUGCUCCACAGCUAUGAGCAGCGACUGGCCUGGGACUACCAGCGCCAGCUGCAGGAGCACUUCCAGGCAC ...........................................(((.....((((((...((.....)).(((.(((((((((.....)))).))))).))).))))))......))).. (-33.34 = -33.62 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:19 2006