Locus 655

Sequence ID 3R_DroMel_CAF1
Location 2,419,743 – 2,419,841
Length 98
Max. P 0.500000
window1036

overview

Window 6

Location 2,419,743 – 2,419,841
Length 98
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -32.07
Consensus MFE -24.55
Energy contribution -25.75
Covariance contribution 1.20
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.77
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2419743 98 + 27905053
UUUGCACUUGACAGCCCAAGAUUUAUGCGACUGCAGU-UGGUGGUGAUUGCUGGGGAAUUGGUUAGUGG-GAUGCGGAAAUGGUGGGUGUUAAGUGGCUA----------
....(((((((((.((((..((((.((((((..(...-..)..))..(..((((........))))..)-..)))).))))..)))))))))))))....---------- ( -30.80)
>DroSec_CAF1 132942 98 + 1
CUUGCACUUGACAGCCCAAGAUUUAUGCGACUGCAGU-UGGUGGUGAUUGCUGGGGAAUUGGUAGGUGG-GAUGCGGAAAUGGUGGGCGUUAAGUGGCCA----------
....((((((((.(((((..((((.((((((..(...-..)..))..((((..(....)..))))....-..)))).))))..)))))))))))))....---------- ( -33.00)
>DroSim_CAF1 124927 98 + 1
CUUGCACUUGACAGCCCAAGAUUUAUGCGACUGCAGU-UGGUGGUGAUUGCUGGGGAAUUGGUAGGUGG-GAUGCGGAAAUGGUGGGCGUUAAGUGGCCA----------
....((((((((.(((((..((((.((((((..(...-..)..))..((((..(....)..))))....-..)))).))))..)))))))))))))....---------- ( -33.00)
>DroEre_CAF1 127648 96 + 1
UUUGCACUUGACAGCCCAAGAUUUAUGCGACUGCAGU-UGGUGGUGAUUGCUGG-GAAUUGGUA-GUGG-GAUGCGGAAAUGGUGGGUGUUAAGUGGCCG----------
....(((((((((.((((..((((.((((((((((((-(..((((....)))).-.)))).)))-))..-..)))).))))..)))))))))))))....---------- ( -31.40)
>DroYak_CAF1 121862 98 + 1
UUUGCGCUUGACAGCCCAAGAUUUAUGCGACUGCAGU-UGGUGGUGAUUGCUGGGGAAUUGGUAAGUGG-GUUGCGGAAAUGGUGGGUGUUAAGUGGCCA----------
....(((((((((.((((..((((.((((((((((((-(......))))))......(((....))).)-)))))).))))..)))))))))))))....---------- ( -33.80)
>DroAna_CAF1 125053 102 + 1
UUUGCUCCUGACAGCCCAAGAUUUAUGCGACUGCAGUUUGGUGGCGAUUGGUG--GCAUUGCUAAGUGGCGGUGCG------GUGAGCGGUAAUCGGAUGGGGGAGGCGG
....(((((..((..((.........((.(((.......))).))(((((.((--((((((((....)))))))).------.....)).))))))).)).))))).... ( -30.40)
>consensus
UUUGCACUUGACAGCCCAAGAUUUAUGCGACUGCAGU_UGGUGGUGAUUGCUGGGGAAUUGGUAAGUGG_GAUGCGGAAAUGGUGGGCGUUAAGUGGCCA__________
....((((((((.(((((..((((.((((((..(......)..))..(((((........))))).......)))).))))..))))))))))))).............. (-24.55 = -25.75 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:28 2006