| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,253,295 – 17,253,393 |
| Length | 98 |
| Max. P | 0.538466 |
| Location | 17,253,295 – 17,253,393 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.14 |
| Mean single sequence MFE | -31.53 |
| Consensus MFE | -18.95 |
| Energy contribution | -20.40 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17253295 98 - 27905053 UCCUCCCCAGGAA---CUCCAGGCUU-----CCAGUUUUCCAGCCAGCAAGGUGUUGCCCUCCUUCGGGCUUCGACCAUUCGCUGCGCCGACAGGUGCAGUCAUCU-------------- ((((....)))).---.....((((.-----..........)))).....((((..((((......))))..).)))....((((((((....)))))))).....-------------- ( -31.70) >DroSec_CAF1 49830 98 - 1 UCCUCCCCAGGAA---CCCCAGGCUU-----CCAGUUUUCCAGCCAGCAAGGUGUUGCCCUCCUUCGGGCUUCGACCAUUCGCUGCGCCGACAGGUGCAGUCAUCU-------------- ((((....)))).---.....((((.-----..........)))).....((((..((((......))))..).)))....((((((((....)))))))).....-------------- ( -31.70) >DroSim_CAF1 50417 98 - 1 UCCUCCCCAGGAA---CUCCAGGCUU-----CCAGUUUUCCAGCCAGCAAGGUGUUGCCCUCCUUCGGGCUUCGACCAUUCGCUGCGCCGACAGGUGCAGUCAUCU-------------- ((((....)))).---.....((((.-----..........)))).....((((..((((......))))..).)))....((((((((....)))))))).....-------------- ( -31.70) >DroEre_CAF1 51738 101 - 1 UCCUCCCCAGGAA---CUCCAG--UUCCAGGCCAGUUCCACAGCCUGCAAGGUGUUGCCCAUCCUCGGGCUUCGACCAUUCGCUGCGCCGACAGGUGCAGUCAUCU-------------- .........((((---(....)--))))((((..........))))....((((..((((......))))..).)))....((((((((....)))))))).....-------------- ( -35.60) >DroYak_CAF1 72572 98 - 1 UCCUCCCCAGGAA---CUCCAGGGUU-----CCAGUUCCACGGCCUGCAAGGUGUUGCCCAUCUUCGGUUUUCGUCCAUUCGCUGCGCCGACAGGUGCAGUCAUCU-------------- .........((((---((....))))-----))......((((.(((.((((((.....)))))))))...))))......((((((((....)))))))).....-------------- ( -30.80) >DroAna_CAF1 40657 107 - 1 UCCUCCCCUCAGAUGUUUCCUCGAAG-----CCAGUUCUAGACGUGGCAAGGUGUCUUCUUU--------UCCUGGCAUUAGCUGCGCCGACAGGUGCCGACUCCUUUCCCGUAUCCAUG .......((.(((.(((((...))))-----)....)))))(((.((.((((.(((......--------....(((....)))(((((....))))).))).)))).)))))....... ( -27.70) >consensus UCCUCCCCAGGAA___CUCCAGGCUU_____CCAGUUCUACAGCCAGCAAGGUGUUGCCCUCCUUCGGGCUUCGACCAUUCGCUGCGCCGACAGGUGCAGUCAUCU______________ ((((....)))).....................................(((((..((((......))))...........((((((((....))))))))))))).............. (-18.95 = -20.40 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:13 2006