Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,252,708 – 17,252,818 |
Length | 110 |
Max. P | 0.829999 |
Location | 17,252,708 – 17,252,818 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 88.18 |
Mean single sequence MFE | -30.14 |
Consensus MFE | -23.70 |
Energy contribution | -24.34 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.82 |
Structure conservation index | 0.79 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17252708 110 + 27905053 CCAAAUCACUGAGUUUUCCAUUCAUUCCCGCAUUCGUUAUGCCCUUCGUCCCU-----UUGGAUUUGGGCGAAGUCUCGAAUAUGUUCCAGCGAAGGGCUGAAUGCC-UCUUUGAU ....((((..(((................(((((((....(((((((((....-----.((((..((..(((....)))..))...)))))))))))))))))))))-))..)))) ( -32.79) >DroSec_CAF1 49272 110 + 1 CCAAAUCACUGAGUUCUCUAUUCAUUCCCGCAUUCGUUAUGCCCUUCGUCCCU-----UUGGAUUUGGGCGAAGUCUCGAAUAUGUUCCAGUGAAGGGCUGAAUGCC-UCUUUGAU .((((((((((.(..(..(((((......((((.....)))).(((((.(((.-----........))))))))....))))).)..))))))).((((.....)))-).)))).. ( -31.50) >DroSim_CAF1 49854 110 + 1 CCAAAUCACUGAGUUCUCUAUUCAUUCCCGCAUUCGUUAUGCCCUUCGUCCCU-----UUGGAUUUGGGCGAAGUCUCGAAUAUGUUCCAGCGAAGGGCUGAAUGCC-UCUUUGAU ....((((.(((((.....))))).....(((((((....(((((((((....-----.((((..((..(((....)))..))...)))))))))))))))))))).-....)))) ( -33.20) >DroEre_CAF1 51150 107 + 1 CCAAAUCACUGAGUUC--UAUUCACUCCCGAAUUCGUAAUGCCC-UCGUCCCUUGAAUUUGGA------UGAAGUCUCGAAUAUGUUCCAGCGAAGGGCUGAAUGGCUUCUUUGAU ....((((..(((..(--((((((..(((..(((((..((....-((((((.........)))------))).))..))))).(((....)))..))).))))))).)))..)))) ( -24.20) >DroYak_CAF1 71955 116 + 1 CCAAAUCACUGAGUUCUCUAUUCACUCCCGAAUUCGUUAUGCCCUUCGUCCCCUGAAUUUGAAUUAAAGUGAAGUCUCGAAUAUGUUCCGGCGAAGGGCAGAAUGCCUUCUUUGAU ....((((.(((((.....))))).....(((..((((.(((((((((((..((..((((......))))..))....(((....))).))))))))))).))))..)))..)))) ( -29.00) >consensus CCAAAUCACUGAGUUCUCUAUUCAUUCCCGCAUUCGUUAUGCCCUUCGUCCCU_____UUGGAUUUGGGCGAAGUCUCGAAUAUGUUCCAGCGAAGGGCUGAAUGCC_UCUUUGAU ....((((.(((((.....))))).....(((((((....(((((((((..........((((......(((....))).......))))))))))))))))))))......)))) (-23.70 = -24.34 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:12 2006