Locus 6545

Sequence ID 3R_DroMel_CAF1
Location 17,251,354 – 17,251,470
Length 116
Max. P 0.984027
window10658

overview

Window 8

Location 17,251,354 – 17,251,470
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.97
Mean single sequence MFE -24.80
Consensus MFE -22.36
Energy contribution -22.04
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.72
Structure conservation index 0.90
SVM decision value 1.96
SVM RNA-class probability 0.984027
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17251354 116 - 27905053
CCAAUGGGCAACUAACGAAUGUAAAAGAGACAGUCGACGGACAAAAA-AAAAAACAUAAAAUAAAGGCAAGGAGGCGCACAAGGGUUGCUCACUGGCUUAUUGCUCAAGUGGCAAAA
(((.(((((((((..(((.(((.......))).)))...........-..................((......)).......))))))))).)))....(((((.....))))).. ( -24.80)
>DroSec_CAF1 47866 117 - 1
CCAAUGGGCAACUAACGAAUGUAAAAGAGACAGUCGACGGAAAAAAACAUAAAACAUAAAAUAAAGGCAAGGAGGCGCACAAGGGUUGCUCACUGGCUUAUUGCUCAAGUGGCAAAA
(((.(((((((((..(((.(((.......))).)))..............................((......)).......))))))))).)))....(((((.....))))).. ( -24.80)
>DroSim_CAF1 48459 117 - 1
CCAAUGGGCAACUAACGAAUGUAAAAGAGACAGUCGACGGAAAAAAACAUAAAACAUAAAAUAAAGGCAAGGAGGCGCACAAGGGUUGCUCACUGGCUUAUUGCUCAAGUGGCAAAA
(((.(((((((((..(((.(((.......))).)))..............................((......)).......))))))))).)))....(((((.....))))).. ( -24.80)
>DroEre_CAF1 49728 109 - 1
CCAAUGGGCAACUAACGAAUGUAAAAGAGACAGUCAACGAAAAAACG-A------AUG-AAUAAAGGUAAGGAGGCGCACAAGGGUUGCUUACUGGCUUAUUGCUCAAGUGGCAAAA
(((.((((((((....)..............((((..((......))-.------...-......((((((..(((.(....).))).))))))))))..)))))))..)))..... ( -20.80)
>DroYak_CAF1 70569 116 - 1
CCAGUGGGCAACUAACGAAUGUAAAAGAGACAGUCAACGAAAAAAAC-AUAAAACAUGAAAUAAAGGCAAGGAGGCGCACAAGGGUUGCUCACUGGCUUAUUGCUCAAGUGGCAAAA
(((((((((((((...((.(((.......))).))............-..................((......)).......)))))))))))))....(((((.....))))).. ( -28.80)
>consensus
CCAAUGGGCAACUAACGAAUGUAAAAGAGACAGUCGACGGAAAAAAA_AUAAAACAUAAAAUAAAGGCAAGGAGGCGCACAAGGGUUGCUCACUGGCUUAUUGCUCAAGUGGCAAAA
(((.(((((((((...((.(((.......))).))...............................((......)).......))))))))).)))....(((((.....))))).. (-22.36 = -22.04 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:10 2006