Locus 6541

Sequence ID 3R_DroMel_CAF1
Location 17,247,211 – 17,247,311
Length 100
Max. P 0.997976
window10646

overview

Window 6

Location 17,247,211 – 17,247,311
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -30.77
Consensus MFE -29.32
Energy contribution -29.57
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -2.19
Structure conservation index 0.95
SVM decision value 2.97
SVM RNA-class probability 0.997976
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17247211 100 + 27905053
UAGCCAUAACAAGCGACCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGCCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA--------------------AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))...............--------------------.. ( -32.00)
>DroSec_CAF1 43625 100 + 1
UAGCCAUAACAAGCGACCAUUUGUAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGCCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA--------------------AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))...............--------------------.. ( -30.00)
>DroSim_CAF1 44310 100 + 1
UAGCCAUAACAAGCGACCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGUCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA--------------------AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))...............--------------------.. ( -29.30)
>DroEre_CAF1 44394 100 + 1
UAGCCAUAACAAGCGACCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGCCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA--------------------AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))...............--------------------.. ( -32.00)
>DroYak_CAF1 66436 100 + 1
UAGCCAUAACAAGCGACCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGCCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA--------------------AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))...............--------------------.. ( -32.00)
>DroAna_CAF1 35446 118 + 1
UAGCCGUAACAAGCGAGCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUACGAGGGCCAUAAAA-UAGUUUUGCAUGUUGCACCA-AAAUACAAAAAACGGAAAAAAUGGAAUGAAAA
...((((((((.((((((((((..(((((.(((.(((..((....))..))).))).))))).)))-).).))))).)))))).((.-.............)).......))........ ( -29.34)
>consensus
UAGCCAUAACAAGCGACCAUUUGCAUGGCGCUUUUGAUGUGCGUUCGUGUUGCGAGGGCCGUAAAAAGUGUUUUGCAUGUUGCACCGAAAACACAAAA____________________AA
............(((((....((((..((((((((.(((.((.((((.....)))).))))).))))))))..)))).)))))..................................... (-29.32 = -29.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:59 2006