Locus 6538

Sequence ID 3R_DroMel_CAF1
Location 17,245,272 – 17,245,391
Length 119
Max. P 0.784635
window10642

overview

Window 2

Location 17,245,272 – 17,245,391
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.98
Mean single sequence MFE -36.80
Consensus MFE -33.72
Energy contribution -34.08
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.19
Structure conservation index 0.92
SVM decision value 0.57
SVM RNA-class probability 0.784635
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17245272 119 - 27905053
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAGAAUCCCAA-
...((.((...(((((.......)))))(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))..........)).)).- ( -37.90)
>DroSec_CAF1 41651 119 - 1
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAGAAUCCCAA-
...((.((...(((((.......)))))(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))..........)).)).- ( -37.90)
>DroSim_CAF1 42358 119 - 1
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAGAAUCCCAA-
...((.((...(((((.......)))))(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))..........)).)).- ( -37.90)
>DroEre_CAF1 42426 119 - 1
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAGAAUCCCAA-
...((.((...(((((.......)))))(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))..........)).)).- ( -37.90)
>DroYak_CAF1 64438 119 - 1
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAAAAACCCUA-
.(((((.(.((.....)).).)))))..(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))................- ( -37.70)
>DroAna_CAF1 33456 119 - 1
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACCGCUGUCUUUGAUCUUCGCUCCUCCGAGGUGUAAGGUAGGCAAGUCAAUG-CGGUGGCAAUGCCGGCACCUGAAGAUACCACAA
.(((((.(.((.....)).).)))))..((((((((((((((..((((.(((.(((...((.........))..)))))))))).)-))))))...)))))))................. ( -31.50)
>consensus
CAAUGAGAAGAUUAAUUUAUGUUAUUAAGUCGGCACGGCAGCCUUUGAUCUUCGCUUCUGCGAGGUGUAAGGUAGGCCAGUCAAUGGCGGUGGCAAUGCCGGCACCUGAAGAAUCCCAA_
.(((((.(.((.....)).).)))))..(((((((..((.(((((....((((((....))))))...)))))..((((.....))))....))..)))))))................. (-33.72 = -34.08 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:55 2006