Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,244,488 – 17,244,585 |
Length | 97 |
Max. P | 0.632417 |
Location | 17,244,488 – 17,244,585 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -18.46 |
Energy contribution | -18.50 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.50 |
Structure conservation index | 0.73 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17244488 97 + 27905053 AGGAAAACACAUCGAGUGCUUAUUAAUGAGCG-CUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGCGAAUGCCUUACGG (((....(.(((((((((((((....))))))-))))(((((...........))----))).((((((........))))))..))).)....)))..... ( -24.40) >DroSec_CAF1 40900 98 + 1 AGGAAAACACAUCGAGUGCUUAUUAAUGAGCGACUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG (((....(((((((((((((((....))))).)))))(((((...........))----))).((((((........))))))..)))))....)))..... ( -24.90) >DroSim_CAF1 41626 98 + 1 AGGAAAACACAUCGAGUGCUUAUUAAUGAGCGACUCGCCAACAAAAACCACAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG (((....(((((((((((((((....))))).)))))(((((...........))----))).((((((........))))))..)))))....)))..... ( -24.90) >DroEre_CAF1 41721 97 + 1 CAGAAAACACAUCGAGUGCUUAUUAAUGAGCG-CUCGCCAACAAAAACCAUAGGU----UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG .......(((((((((((((((....))))))-))))(((((...........))----))).((((((........))))))..)))))............ ( -26.10) >DroYak_CAF1 63688 101 + 1 AAGAAAACACAUCGAGUGCUUAUUAAUGAGCG-UUCGCCAACAAAAACCAUAGGUUGGUUGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG .......(((((((((((((((....))))))-))))(((((...((((...)))).))))).((((((........))))))..)))))............ ( -25.50) >consensus AGGAAAACACAUCGAGUGCUUAUUAAUGAGCG_CUCGCCAACAAAAACCACAGGU____UGGGAAUCAAUUUUAAAUUUGAUUAAAUGUGAAUGCCUUUCGG .......(((((((((((((((....)))))).))))(((......(((...)))....))).((((((........))))))..)))))............ (-18.46 = -18.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:54 2006