| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,238,585 – 17,238,702 |
| Length | 117 |
| Max. P | 0.728355 |
| Location | 17,238,585 – 17,238,702 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.91 |
| Mean single sequence MFE | -36.32 |
| Consensus MFE | -19.68 |
| Energy contribution | -21.53 |
| Covariance contribution | 1.85 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17238585 117 - 27905053 CCCCGACCAGUUUUUGGCCAACAGCAAGCUAGCCACGGCCUUUAAUUAGAGGCGUGGCUAGGACGUGGUAUUUAUG-GCAAGUG--GGCAACAUUAAACUGGCUAAUGAACAAAAUUGAG ....(.((((((((((.(((...((...(((((((((.(((((....))))))))))))))..((((.....))))-))...))--).)))....))))))))................. ( -39.60) >DroSec_CAF1 35063 118 - 1 CCCCAACCAGUUUUUGGCCAACAGCAGGCUAGCCACGGCCUUUAAUUAGAGGCGUGGCUAGGACGUGGUAUUGAUGGGCAAGUG--GGCCACAUUAAACUGGCUAAUGAACAAAAUUGAG .........(((((((((((((.((...(((((((((.(((((....))))))))))))))...)).)).(((((((((.....--.))).))))))..))))))).))))......... ( -43.70) >DroSim_CAF1 35568 117 - 1 CCCCAACCAGUUUUUGGCCAACAGCAGGCUAGCCACGGCCUUUAAUUAGAGGCGUGGCUAGGACGUGGUAUUGAUG-GCAAGUG--GGCCACAUUAAACUGGCUAAUGAACAAAAUUGAG ......(((((((.(((((.((......(((((((((.(((((....))))))))))))))...((.((....)).-))..)).--)))))....))))))).................. ( -42.40) >DroEre_CAF1 36040 118 - 1 CCCCGACCAGUUUUUUACCAACAGCAGGCUUGCCACGGCUUUUAAUUAGAGGCGUGGCUAGGACGUGGUAUUGAUG--CAAGUGGGGGCCACAUUUAACUGGAUACUGAACAAAAUUGAG ((((.((..((((..(((((...(....(((((((((.((((.....)))).)))))).))).).)))))..)).)--)..)).))))(((........))).................. ( -34.60) >DroYak_CAF1 55163 117 - 1 CACCGACCAGUUUUUGGCCAACAGCAGGCUUGGCACGGCUUUUAAUUAGAGGCGUGGCUAUGACGUGGUAUUGAUG-GCUAGUG--GGCCACAUUACACUGGAUAAUUAACUAAAUUGAA ......(((((....((((.......)))).(.((((.((((.....)))).)))).).........(((.((.((-(((....--))))))).)))))))).................. ( -32.10) >DroAna_CAF1 27501 88 - 1 GCUCGACCAGUUUUUGGUC------AGGUUUGCCAUGUCUUUUAAUUAGAGGCGUGUUU-------GCUUUAGAUG-GCCAAUC--UGCUU----------------UCAGGAAGCCAAA ....((((((...))))))------.(((((.((((((((((.....)))))))))...-------......((.(-((.....--.))).----------------)).).)))))... ( -25.50) >consensus CCCCGACCAGUUUUUGGCCAACAGCAGGCUAGCCACGGCCUUUAAUUAGAGGCGUGGCUAGGACGUGGUAUUGAUG_GCAAGUG__GGCCACAUUAAACUGGCUAAUGAACAAAAUUGAG ......(((((((..((((.......)))).((((((.(((((....)))))))))))......(((((....((......))....)))))...))))))).................. (-19.68 = -21.53 + 1.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:42 2006