Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,411,434 – 2,411,541 |
Length | 107 |
Max. P | 0.917352 |
Location | 2,411,434 – 2,411,541 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.38 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -26.58 |
Energy contribution | -26.80 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -2.05 |
Structure conservation index | 0.87 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2411434 107 + 27905053 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAUGGC------------ ...((.(((((.((...(((........((((((((...((.((((.((....(....).))..)))).)).)))))))).........))).)).))))).))...------------ ( -31.23) >DroSec_CAF1 124653 107 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC------------ ......(((((..(((((......)))))(((((((...((.((((.((....(....).))..)))).)).)))))))...........)))))..(.(....).)------------ ( -30.30) >DroSim_CAF1 116539 107 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC------------ ......(((((..(((((......)))))(((((((...((.((((.((....(....).))..)))).)).)))))))...........)))))..(.(....).)------------ ( -30.30) >DroEre_CAF1 119622 119 + 1 CAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGGCGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGUGGAAGGCAAGGGAAGUGGG ....(((((((.((((((......))))))))))))).(((((.(((((....(....).((...(((........)))..))..............)))))...)))))......... ( -33.30) >DroYak_CAF1 114034 119 + 1 UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGCAAAGGAAGUUGG ....(((.(((.(((..(((........((((((((...((.((((.((....(....).))..)))).)).)))))))).........)))...))).)))...)))........... ( -32.33) >DroAna_CAF1 116985 102 + 1 UAAAUACGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAGAAGAAGGAAACGGAAAAGCGGAAGACGACGCACUCAAACAAAAAGAGGGGGCGG----------------- ......((((..((((((......)))))(((((((..(((((.((.......(....)))....)))))..)))))))...............)..)))).----------------- ( -25.61) >consensus UAAAUGCGCUGACGUAAUGUGAAAAUUAUGCGUUGUAAUUUGCGCCAUCAGAAGGAAACGGAAAGGCGGAAGACGACGCACUCAAACAAACAGUGGCGGCGGAAGGC____________ ......(((((.((((((......)))))(((((((...((.((((.......(....).....)))).)).)))))))...............).))))).................. (-26.58 = -26.80 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006