| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,232,598 – 17,232,717 |
| Length | 119 |
| Max. P | 0.731743 |
| Location | 17,232,598 – 17,232,717 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.50 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -9.98 |
| Energy contribution | -12.58 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17232598 119 + 27905053 UUUUAGUAUUUUCGCAGCCUAUUUUGAAGGGAUGUGUAUCGAUAAUAUCACAGAAUACUUUAUUAUCGACUACAAUCGAAUAUGUCGGUGUAGAAAU-AGCUUAAGAUAUUGACAGUAAA ..((((((((((((((.(((........))).))))..(((((((((.............)))))))))(((((.((((.....)))))))))....-.....))))))))))....... ( -25.82) >DroSec_CAF1 28222 111 + 1 UUUUAGUAUUUUCGCAGCCUAAUUUGAAUGGAUGUGUAUCGAUAAUA--------UACCUUAUUAUCGACUACAAUCGAAUAUGCCGGUGUAGAAAU-AGAUUAGGAUAUUGACAGUAAA ......((((.(((...(((((((((............(((((((((--------.....)))))))))(((((.(((.......))))))))...)-))))))))....))).)))).. ( -26.30) >DroSim_CAF1 29407 111 + 1 UUUUAGUAUUUUCGCAGCGUAAUUUGAAUGGAUGUGUAUCGAUAAUA--------UAGCUUAUUAUCGACUACAAUCGAAUAUGCCGGUGUAGAAAU-AGCUAAAGAUAUUGACAGUAAA ((((((((((((..((.((((((((((.......(((((((((((((--------.....))))))))).)))).)))))).)).)).))..)))))-.))))))).............. ( -26.60) >DroEre_CAF1 29968 102 + 1 UUUUAGUAUUUUUGCAGCUG---UCCUAAGAAUGUGUGUCGAUAAUUUUACAA---------------ACUACAAUCGAAUAAGCCGGUGGGGAAAUUGGCUUAAGAUAUUGACAGUAAA .....(((....))).((((---((....((.(((((((.((....)).))).---------------..)))).))...(((((((((......))))))))).......))))))... ( -22.90) >DroYak_CAF1 36980 98 + 1 UUUCU--A--UCU------------------GCGUGUAUCGAUAAUAUAACUAAAUAUUUUAUUAUCGACAACAAUCGAAUGAGCCGGUGUGGAAAUUAGCUUAAGAUAUUGGCAGUAAA .....--.--.((------------------((((...(((((((((.............)))))))))..)).(((...(((((..((......))..))))).)))....)))).... ( -22.02) >consensus UUUUAGUAUUUUCGCAGCCUA_UUUGAAUGGAUGUGUAUCGAUAAUAU_AC____UACCUUAUUAUCGACUACAAUCGAAUAUGCCGGUGUAGAAAU_AGCUUAAGAUAUUGACAGUAAA ..((((((((((..........................(((((((((.............)))))))))(((((.(((.......))))))))..........))))))))))....... ( -9.98 = -12.58 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:36 2006