Locus 6527

Sequence ID	3R_DroMel_CAF1
Location	17,227,448 – 17,227,562
Length	114
Max. P	0.517993

overview

Window 8

Location	17,227,448 – 17,227,562
Length	114
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	89.25
Mean single sequence MFE	-34.57
Consensus MFE	-28.38
Energy contribution	-28.50
Covariance contribution	0.12
Combinations/Pair	1.06
Mean z-score	-1.37
Structure conservation index	0.82
SVM decision value	-0.03
SVM RNA-class probability	0.517993
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17227448 114 - 27905053
AACAAUGCCACACGCAUGAUUACAUGAUCAUGGAGCCACUGCAUCACCAUCACCAUCAUGUGGGCGGGGGAAGCUAUGCUACGUAAACUGACUGGCGGCCCCGAUGGUUUCCAA
.....((((...((((((((....((((..((..((....))..))..))))..))))))))))))..(((((((((((((.((......))))))(....).))))))))).. ( -32.90)
>DroSim_CAF1 24127 105 - 1
AACAAUGCCACACGCAUGAUUACAUGAUCAUGGAGCCACUGCAUCACC---------ACGUGGGCGGGGGAAGCUAUGCUACGUAAACUGACUGGCGGCCCCGGUGGUUUCCAA
.....((((.(((((((((((....)))))))((((....)).))...---------.))))))))..(((((((((((((.((......))))))(....).))))))))).. ( -33.80)
>DroEre_CAF1 24668 99 - 1
AACAAUGCCACACGCAUGAUUACAUGAUCAUGGAGCCACUGCAUCACC---------ACGUGGGCGGGG------AAGCUACGUAAACUGACUGGCGGCCCCGGUGGUUUCCAA
....((((.....))))((((....)))).((((((((((((.((((.---------..))))))((((------..((((.((......))))))..))))))))).))))). ( -35.20)
>DroYak_CAF1 31411 99 - 1
AACAAUGCCACACGCAUGAUUACAUGAUCAUGGAGCCACUGCAUCGCC---------ACGUGGGCGGGG------AAGCCACAUAAACUGACUGGCGGCCCCGGUGGUUUCCAA
....((((.....))))((((....)))).((((((((((.....(((---------.....)))((((------..((((...........))))..))))))))).))))). ( -36.40)
>consensus
AACAAUGCCACACGCAUGAUUACAUGAUCAUGGAGCCACUGCAUCACC_________ACGUGGGCGGGG______AAGCUACGUAAACUGACUGGCGGCCCCGGUGGUUUCCAA
......(((((.(((((((((....)))))))..(((.((((.((((............))))))))..........((((.((......)))))))))..)))))))...... (-28.38 = -28.50 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:32 2006