Locus 6526

Sequence ID 3R_DroMel_CAF1
Location 17,220,009 – 17,220,115
Length 106
Max. P 0.630650
window10617

overview

Window 7

Location 17,220,009 – 17,220,115
Length 106
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 81.32
Mean single sequence MFE -17.92
Consensus MFE -11.07
Energy contribution -11.10
Covariance contribution 0.03
Combinations/Pair 1.26
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.20
SVM RNA-class probability 0.630650
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17220009 106 + 27905053
ACAUCCCAAUCCAAA------UCCAAAUCGGAUUCGAUCCAACCACCCCGCUUUCGGUGGCCACUCCUUUGCUUAUUUGGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
..........(((((------(.((((..((((...))))..(((((........))))).......))))...))))))...........(((((((....)))))))... ( -17.70)
>DroPse_CAF1 14268 89 + 1
----------------------CC-GAUCUGAUCAGAUCGGAUCGUUCCCUUCCCGGUGGCCACUCCUUUGCUUAUUUAGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUGGG
----------------------((-(((((....)))))))...........(((((.(....).))...(((.....)))..........(((((((....)))))))))) ( -21.30)
>DroSec_CAF1 15445 112 + 1
ACAUCCCAAUCCAAAUCCAAAUCCAAAUCGGAUUCGAUCCAACCACCCCGCUUUCGGUGGCCACUCCUUUGCUUAUUUGGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
..........((((((.(.(((((.....))))).)......(((((........)))))..............))))))...........(((((((....)))))))... ( -18.10)
>DroSim_CAF1 16263 112 + 1
ACAUCCCAAUCCAAAUCCAAAUCCAAAUCGGAUUCGAUCCAACCACCCCGCUUUCGGUGGCCACUCCUUUGCUUAUUUGGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
..........((((((.(.(((((.....))))).)......(((((........)))))..............))))))...........(((((((....)))))))... ( -18.10)
>DroEre_CAF1 17329 98 + 1
--------------AUCCAAAUCCAAAUCCGAUUCGAUCCAACCACCCCGCUUUCGGGGGCCACUCCUUUGCUUAUUUGGUUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
--------------...................((((...((((((((((....)))))((.........)).....)))))..........((((((....)))))))))) ( -16.80)
>DroYak_CAF1 23532 95 + 1
-----------------CAAAUCCAAAUCCGAUUCGAUCCAACCACGCCGCUUUCGGUGGCCACUCCUCUGCUUAUUUGGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
-----------------................((((.........(((((.....)))))...........(((((((....)))))))..((((((....)))))))))) ( -15.50)
>consensus
______________A__CAAAUCCAAAUCGGAUUCGAUCCAACCACCCCGCUUUCGGUGGCCACUCCUUUGCUUAUUUGGCUUCAAAUAAAAAAUCAUUUAAAUGAUUUCGA
......................((((((..(...........(((((........)))))...........)..))))))...........(((((((....)))))))... (-11.07 = -11.10 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:31 2006