Locus 6525

Sequence ID 3R_DroMel_CAF1
Location 17,216,962 – 17,217,070
Length 108
Max. P 0.878837
window10616

overview

Window 6

Location 17,216,962 – 17,217,070
Length 108
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 88.00
Mean single sequence MFE -23.48
Consensus MFE -20.90
Energy contribution -21.40
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.89
SVM decision value 0.91
SVM RNA-class probability 0.878837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17216962 108 - 27905053
GAGGCAGGUCCUUGUGUCGUCAGCCACCAACUGUGCCGCUAAGGACAUGUCUAUGUUCCCAAUUCCGAUCCUAAU-UCCGAUCCCAAUCCCGUUCCCACUCCUCCUCCU
((((.(((((((((((.((.(((.......))))).))).))))))....................((((.....-...))))...............))))))..... ( -22.70)
>DroSec_CAF1 12478 108 - 1
GAGGCAUGUCCUUGUGUCGUCAGCCACCAACUGUGCUGCUAAGGACAUGUCUAUGUACAUAAUUUCGAUCCUAAUUUCCGAUCCCAAACCCGUUCCCACUCCUCCUCC-
.(((((((((((((.((.(((((.......))).)).)))))))))))))))..............((((.........)))).........................- ( -24.70)
>DroSim_CAF1 12800 108 - 1
GAGGCAUGUCCUUGUGUCGUCAGCCACCAACUGUGCUGCUAAGGACAUGUCUAUGUACCCAAUUCCGAUCCUAAU-UCCGAUCCCAAACCCGUUCCCACUCCUCCUCCU
.(((((((((((((.((.(((((.......))).)).)))))))))))))))..............((((.....-...)))).......................... ( -25.50)
>DroEre_CAF1 14303 95 - 1
GAGCCAUGUCCUUGUGUCGUCAGCCACCUACUGAGCUGCUAAGGACAUGUCUAUGUUCCUAAUU-------------CCGAUCCCGAUCCCGUUCCCACUCCUCCUCC-
((((((((((((((.((.(((((.......)))).).))))))))))))...............-------------..(((....)))..)))).............- ( -21.00)
>consensus
GAGGCAUGUCCUUGUGUCGUCAGCCACCAACUGUGCUGCUAAGGACAUGUCUAUGUACCCAAUUCCGAUCCUAAU_UCCGAUCCCAAACCCGUUCCCACUCCUCCUCC_
.(((((((((((((.((.(((((.......))).)).)))))))))))))))......................................................... (-20.90 = -21.40 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:30 2006