| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,195,603 – 17,195,693 |
| Length | 90 |
| Max. P | 0.771493 |
| Location | 17,195,603 – 17,195,693 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.53 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -16.07 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17195603 90 + 27905053 AUCCUAG-------------UGGUCAAUCUGUCUAAUGGAUGUAGCCAUAUUUCCUUCCAUUAACCAAGCUCAAAGUUUGCC-----------------AGAUGCUUAGAUUGGCUAACA .......-------------(((((((((((..(((((((.(((....))).....)))))))..(((((.....)))))..-----------------.......)))))))))))... ( -21.50) >DroSim_CAF1 18068 102 + 1 AUCCUAAACAAAUGUGUUAGGGGUC-AUCUGUCUAAUGGAUGUAGCCAUAUUUCCUUCCAUUGACCAAGCUCAAAGUUUGAU-----------------AGAUACUUAGAUUGGCAAACA .((((((((....)).))))))(((-(((((((.((((((.(((....))).....)))))))))(((((.....)))))..-----------------........))).))))..... ( -21.90) >DroEre_CAF1 19269 112 + 1 AUCU--------UGGGCUAGGGGCCAAUCUAUCCAAUGGAUGUAACCAUAUUUCUCUCCAUUAACCAAGCUCAAAGUUUGUCAUGGUGUAGUAGAACACAGAUUCCUAGAUUUGCUAACA ...(--------((((((.((((.........))((((((................))))))..)).)))))))(((..(((...((((......))))((....)).)))..))).... ( -21.49) >consensus AUCCUA______UG_G_UAGGGGUCAAUCUGUCUAAUGGAUGUAGCCAUAUUUCCUUCCAUUAACCAAGCUCAAAGUUUGAC_________________AGAUACUUAGAUUGGCUAACA ......................(((((((((..(((((((................)))))))..(((((.....)))))..........................)))))))))..... (-16.07 = -16.52 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:21 2006