Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,404,940 – 2,405,031 |
Length | 91 |
Max. P | 0.779015 |
Location | 2,404,940 – 2,405,031 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.69 |
Mean single sequence MFE | -40.93 |
Consensus MFE | -27.42 |
Energy contribution | -27.73 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -2.50 |
Structure conservation index | 0.67 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2404940 91 + 27905053 -GUGGCGAUGGCAGGGGGCGUGGCAAGUC---GUCC-------UGCGAGUCAAGAGCUCGCUCGCUGCCAUUUCCCCC-UGUCAGGGACUCAAUGUGUCCGUA----- -...((..((((((((((.((((((.(.(---(...-------.((((((.....)))))).)))))))))..)))))-))))).((((.......)))))).----- ( -45.40) >DroSec_CAF1 118097 91 + 1 -GUGGCGAUGGCAGGGGGCGUGGCAAGUC---GUCC-------UGCGAGUCAAGAGCUCGCUCGCUGCCAUUUCCCCC-UGUCAAGGACUCAAUGUGUCCGUA----- -...((..((((((((((.((((((.(.(---(...-------.((((((.....)))))).)))))))))..)))))-))))).((((.......)))))).----- ( -45.60) >DroSim_CAF1 110170 91 + 1 -GUGGCGAUGGCAGGGGGCGUGGCAAGUC---GUCC-------UGCGAGUCAAGAGCUCGCUCGCUGCCAUUUCCCCC-UGUCAAGGACUCAAUGUGUCCGUA----- -...((..((((((((((.((((((.(.(---(...-------.((((((.....)))))).)))))))))..)))))-))))).((((.......)))))).----- ( -45.60) >DroEre_CAF1 111814 91 + 1 -AUGGCUAUGGCAGGGGGCGUGGCAAGCC---GUCC-------UGCGAGUCAAGAGCUCACUCGCUGCCAUUUCCCCC-UGUCAAGGACUCAAUGUGUCCAUA----- -.......((((((((((.((((((....---....-------.((((((.........))))))))))))..)))))-))))).((((.......))))...----- ( -40.20) >DroYak_CAF1 106303 91 + 1 -GUGGCUAUGGCGGCGGG-GUGGCAAAUU---GUCC-------UGCGAGUCAAGAGCUCACUCGCUGCCCUCUCCCCCAUGUCAAGGACUCAAUGUGUCCGUA----- -.((((.((((.((.(((-(.((((....---....-------.((((((.........)))))))))))))).)))))))))).((((.......))))...----- ( -33.90) >DroAna_CAF1 110081 107 + 1 UAGGGCCAGGGCUGGGGAGGUAGCAAAGAGAGGUUCAAAGGAUGGGAAGUCAAGAGCUCGUUCUCAGCCAUUUUCCCC-UGUCAAGGCCUCAAUGUGUCCGUGUCCGU ..(((((..(((.(((((((..((..((((.(((((....(((.....)))..)))))..))))..))...)))))))-.)))..))))).................. ( -34.90) >consensus _GUGGCGAUGGCAGGGGGCGUGGCAAGUC___GUCC_______UGCGAGUCAAGAGCUCGCUCGCUGCCAUUUCCCCC_UGUCAAGGACUCAAUGUGUCCGUA_____ ........((((((((((.((((((...................((((((.........))))))))))))..))))).))))).((((.......))))........ (-27.42 = -27.73 + 0.31)
Location | 2,404,940 – 2,405,031 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.69 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -24.16 |
Energy contribution | -24.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.22 |
Mean z-score | -1.56 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2404940 91 - 27905053 -----UACGGACACAUUGAGUCCCUGACA-GGGGGAAAUGGCAGCGAGCGAGCUCUUGACUCGCA-------GGAC---GACUUGCCACGCCCCCUGCCAUCGCCAC- -----...((((.......)))).((.((-(((((...(((((((((((((....))).)))))(-------(...---..)))))))..))))))).)).......- ( -37.70) >DroSec_CAF1 118097 91 - 1 -----UACGGACACAUUGAGUCCUUGACA-GGGGGAAAUGGCAGCGAGCGAGCUCUUGACUCGCA-------GGAC---GACUUGCCACGCCCCCUGCCAUCGCCAC- -----...((((.......)))).((.((-(((((...(((((((((((((....))).)))))(-------(...---..)))))))..))))))).)).......- ( -38.20) >DroSim_CAF1 110170 91 - 1 -----UACGGACACAUUGAGUCCUUGACA-GGGGGAAAUGGCAGCGAGCGAGCUCUUGACUCGCA-------GGAC---GACUUGCCACGCCCCCUGCCAUCGCCAC- -----...((((.......)))).((.((-(((((...(((((((((((((....))).)))))(-------(...---..)))))))..))))))).)).......- ( -38.20) >DroEre_CAF1 111814 91 - 1 -----UAUGGACACAUUGAGUCCUUGACA-GGGGGAAAUGGCAGCGAGUGAGCUCUUGACUCGCA-------GGAC---GGCUUGCCACGCCCCCUGCCAUAGCCAU- -----...((((.......)))).((.((-(((((...((((.((((((.((...)).))))))(-------((..---..)))))))..))))))).)).......- ( -36.20) >DroYak_CAF1 106303 91 - 1 -----UACGGACACAUUGAGUCCUUGACAUGGGGGAGAGGGCAGCGAGUGAGCUCUUGACUCGCA-------GGAC---AAUUUGCCAC-CCCGCCGCCAUAGCCAC- -----...((((.......)))).....((((.((.(.(((..((((((....(((((.....))-------))).---.))))))..)-))).)).))))......- ( -29.90) >DroAna_CAF1 110081 107 - 1 ACGGACACGGACACAUUGAGGCCUUGACA-GGGGAAAAUGGCUGAGAACGAGCUCUUGACUUCCCAUCCUUUGAACCUCUCUUUGCUACCUCCCCAGCCCUGGCCCUA .((....))..........((((..(.(.-(((((...((((.((((.(((....)))......((.....))....))))...))))..))))).).)..))))... ( -25.40) >consensus _____UACGGACACAUUGAGUCCUUGACA_GGGGGAAAUGGCAGCGAGCGAGCUCUUGACUCGCA_______GGAC___GACUUGCCACGCCCCCUGCCAUCGCCAC_ ........((((.......)))).......(((((...(((((((((((((....))).)))))........(........).)))))..)))))............. (-24.16 = -24.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:25 2006