| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,194,429 – 17,194,528 |
| Length | 99 |
| Max. P | 0.808190 |
| Location | 17,194,429 – 17,194,528 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.61 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -15.35 |
| Energy contribution | -15.72 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17194429 99 - 27905053 UUCAGGUGCAUCCCCAGCUCGCUGACAUCGAUUGUAGCUGGGGAUUCAUCAUCCAGUAUUGCU-CCAGCAAUUGCAUCGCUGGUCAGCU------GAAUCUCUUGU ((((((((.((((((((((.((...........)))))))))))).))))..(((((..(((.-.........)))..))))).....)------)))........ ( -35.30) >DroPse_CAF1 17881 105 - 1 UUUAGGUGCAUCCCCAGCUCGUUCACAUCAAUGGUCGCCGGCGAUUCAUCCUCCAAUGCUGUGGUCAA-CAUCGCAUCGCUGGCCAGCUGCUCUUGCAUCUCUUGA ...(((((((....(((((((((......))))...((((((((............(((.(((.....-))).))))))))))).)))))....)))))))..... ( -33.00) >DroGri_CAF1 17989 99 - 1 UUUAAAUGCAUGCCCAGCUCGUUGACAUCGAUGGUGGCGGCAGACUCAUCCGCCAACGUGGUGGUAAG-UAUUGCAUCGCUGGGCAAUU------GUUGUUGGUGU .((((..(((((((((((((((((....)))))).....(((((((...(((((.....)))))..))-).))))...))))))))..)------))..))))... ( -35.30) >DroEre_CAF1 18025 99 - 1 UUUAGGUGCAUCCCCAGCUCGCUGACAUCGAUUGUGGCUGGGGAUUCGUCUUCCAGUAUUGCU-CCCGCAAUCGCAUCGCUGGUCAGCU------GAAUCUCUUGU ....((((((((((((((.(((...........))))))))))))..........(.(((((.-...)))))))))))(((....))).------........... ( -33.80) >DroYak_CAF1 17808 99 - 1 UUCAGGUGCAUCCCCAGCUCGCUGACAUCGAUUGUAGCUGGGGAUUCGUCGUCCAGUAUUGCU-CCAGCAAUUGCAUCGCUGGUCAUAU------GAAUCUCUUGU (((((..(.((((((((((.((...........)))))))))))).)..)(.(((((..(((.-.........)))..))))).)...)------)))........ ( -34.90) >DroAna_CAF1 19427 99 - 1 UUCAGAUGCAUGCCUAGCUCACUGACAUCGAUGGUGGCCGGGGAUUCAUCUUCUAGUGUGGUGGUCAGC-AUCGCAUCGCUGGUAAGUU------GAAUCUCUUGU .((((..((.......))...))))(((.....)))((.(((((((((.(((((((((..(((((....-)))))..)))))).))).)------)))))))).)) ( -31.60) >consensus UUCAGGUGCAUCCCCAGCUCGCUGACAUCGAUGGUGGCUGGGGAUUCAUCCUCCAGUAUUGCG_CCAGCAAUCGCAUCGCUGGUCAGCU______GAAUCUCUUGU ....((((.((((((.(((.((...........))))).)))))).))))..(((((..(((...........)))..)))))....................... (-15.35 = -15.72 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:20 2006