Locus 6516

Sequence ID 3R_DroMel_CAF1
Location 17,184,078 – 17,184,180
Length 102
Max. P 0.798055
window10600

overview

Window 0

Location 17,184,078 – 17,184,180
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -36.22
Consensus MFE -24.40
Energy contribution -24.73
Covariance contribution 0.34
Combinations/Pair 1.31
Mean z-score -1.75
Structure conservation index 0.67
SVM decision value 0.61
SVM RNA-class probability 0.798055
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17184078 102 + 27905053
AUACACAUCCUACAUCCUAAUAGCACUG---CAGACAGUGCUGGGCGUGCUCAUGAUGCCUGGUGAGUCGAGGUCGUCGGCUCAGCUCCACGAGGACGUAGUAGG
........(((((.......((((((((---....)))))))).((((.(((.((..((....((((((((.....))))))))))..)).))).)))).))))) ( -40.60)
>DroSec_CAF1 5561 95 + 1
AUACACAUCCUACAUCCUACCAGCA----------CAGUGCCGGGCGUGCUCAUAAUGCCUGGUGAGUCGAGGUCGUCGGCUCAGCUCCACAAGGACGUAGUAGG
.........((((.((((...(((.----------....(((((((((.......)))))))))(((((((.....))))))).))).....)))).)))).... ( -35.60)
>DroSim_CAF1 5959 95 + 1
AUACACAUCCUACAUCCUACUAGCA----------CAGUGCCGGGCGUGCUCAUAAUGCCUGGUGAGUCGAGGUCGUCGGCUCAGCUCCACAAGGACGUAAUAGG
..........(((.((((...(((.----------....(((((((((.......)))))))))(((((((.....))))))).))).....)))).)))..... ( -33.00)
>DroEre_CAF1 7461 95 + 1
AUACACAUC-------CUACUAGCACUG---CAGACAGUGCUGGGCAUGCUCAUGAUGCCUGGUGAGUUGAGGUCGUCGGCUUAGCUCCACGAGCACAUAGUAGG
........(-------((((((((((((---....)))))).((((((.(....))))))).((((((((((........))))))).))).......))))))) ( -34.20)
>DroYak_CAF1 7289 102 + 1
AUACACAUCCUACAUCCUACAAGCACUG---CAGACAGUGCUGGGCGUGCUCAUGAUGCCUGGUGAGUCGAGGUCGUCGGCUCAGCUCCACGAGGACAUAGUAGG
........(((((.((((.(.(((((((---....)))))))((((((.(....)))))))(.((((((((.....)))))))).).....)))))....))))) ( -37.60)
>DroPer_CAF1 6966 98 + 1
AUACAGAUC-------CUUCCAGCACUAGCCGCAACAGUGCGCGGCAUGACCGUUGUGCUUGGUGAGACGCGGCUUGCGGCUGAGCUCCACCAGGACAUAGUGGG
.........-------............(((((........)))))....(((((((((((((((((...((((.....))))..)).))))))).)))))))). ( -36.30)
>consensus
AUACACAUCCUACAUCCUACUAGCACUG___CAGACAGUGCUGGGCGUGCUCAUGAUGCCUGGUGAGUCGAGGUCGUCGGCUCAGCUCCACGAGGACAUAGUAGG
...............(((((..((...............(((((((((.......)))))))))(((((((.....))))))).))(((....)))....))))) (-24.40 = -24.73 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:15 2006