Locus 6515

Sequence ID 3R_DroMel_CAF1
Location 17,177,461 – 17,177,581
Length 120
Max. P 0.585614
window10599

overview

Window 9

Location 17,177,461 – 17,177,581
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.39
Mean single sequence MFE -36.13
Consensus MFE -33.52
Energy contribution -33.30
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.93
SVM decision value 0.10
SVM RNA-class probability 0.585614
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17177461 120 - 27905053
GCACCCGGAAGAAAAAGCGUAAGCUGGUAAUCGACAGACAUGAGUUUGUCAUGGAUCGGAAGCUGAAGAGCAGCAUCAACUGGCGGUGUGCCAGGUAUCGAAGUUCGAACUGCAAGGUCA
..((((....)....(((....))))))....(((((((....)))))))...((((.((.((((.....)))).))..(((((.....)))))((((((.....)))..)))..)))). ( -37.60)
>DroSec_CAF1 87111 120 - 1
GCACUCGGAAGAAAAAGCGUAAGCUGGUAAUCGACAGACAUGAGUUUGUCAUGGAUCGGAAGCUGAAGAGCAGUAUCAACUGGCGGUGUGCCAGGUAUCGAAGUUCGAAUUGCAAGGUCA
(((.(((((.((...(((....))).....))(((((((....))))))).....(((((.((((.....)))).))..(((((.....)))))....)))..)))))..)))....... ( -35.30)
>DroYak_CAF1 105639 120 - 1
GCACGCGGAAGAAAAAGCGUAAGCUGGUAAUCGACAGACAUGAGUUUGUCAUGGAUCGGAAACUGAAGAGCAGCAUCAACUGGCGUUGUGCCAGAUAUCGAAGUUCGAACUGCAAGGUCA
.....(....)....(((....))).......(((((((....)))))))...(((((....)......((((......(((((.....)))))...(((.....))).))))..)))). ( -35.50)
>consensus
GCACCCGGAAGAAAAAGCGUAAGCUGGUAAUCGACAGACAUGAGUUUGUCAUGGAUCGGAAGCUGAAGAGCAGCAUCAACUGGCGGUGUGCCAGGUAUCGAAGUUCGAACUGCAAGGUCA
.....(....)....(((....))).......(((((((....)))))))...(((((....)......((((......(((((.....)))))...(((.....))).))))..)))). (-33.52 = -33.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:14 2006