| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,170,776 – 17,170,888 |
| Length | 112 |
| Max. P | 0.532877 |
| Location | 17,170,776 – 17,170,888 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.98 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17170776 112 + 27905053 UUGCAUAGCUCCGCCGAAAAUGGCAAACGGGCAACCCAAGACACUG-GUCCCGACCAGAAAGCAGGAGCUCCACACUCGAAAAAACAAGACACUCGAAAUAGGUGCUAUUGCG- ..(((.(((((((((......)))....((....)).......(((-((....)))))......)))))).................((.((((.......))))))..))).- ( -30.80) >DroSec_CAF1 80065 114 + 1 UUGCAUAGCUCCGCCGAAAAUGGCAAACGGGCAACCCAAGACACUGGGUCCCGACCAGAAAGCAGGAGCUCCACACUCGGAGAAAGAAGACACUCGAAAUAGGUGCUAUUGUUC ..((((.((((((((......)))...((((..(((((......)))))))))...........)))))(((......))).....................))))........ ( -33.90) >DroSim_CAF1 66537 113 + 1 UUGCAUAGCUCCGCCGAAAAUGGCAAACGGGCAACCCAAGACACUG-GUCCCGACCAGAAAGCAGGAGCUCCACACUCGGAGAAAGAAGACACUCGAAAUAGGUGCUAUUGUUC ..((((.((((((((......)))....((....)).......(((-((....)))))......)))))(((......))).....................))))........ ( -30.80) >DroEre_CAF1 71218 110 + 1 UUGCAUAGCUCCGCCGAAAAUGGCAAACGGGCAACCCAAGACACUG-GUCCCGACCAGAAAGCAGGAGCUUCACACUCGGAGAAACAAGACCCGCGAAAUAGGUGCU---AUUG ..(((((((((((((......)))....((....)).......(((-((....)))))......)))))).....(.(((.(........)))).)......)))).---.... ( -31.40) >DroYak_CAF1 98722 112 + 1 GUGCAUAGCUCCGCCGAAAAUGGCAAUCGGGCAACCCAAGACACUG-GUCCCGACCAGAAAGCAGGAGCUUCACACUCGAAGAAACAAGACACUCGAAAUGGGAGCU-UGAUUC (((...(((((((((......)))....((....)).......(((-((....)))))......))))))...))).....(((.((((.(.(((.....))).)))-)).))) ( -34.50) >consensus UUGCAUAGCUCCGCCGAAAAUGGCAAACGGGCAACCCAAGACACUG_GUCCCGACCAGAAAGCAGGAGCUCCACACUCGGAGAAACAAGACACUCGAAAUAGGUGCUAUUGUUC ..(((((((((((((......)))....((....)).......(((.((....)))))......))))))......((((.............)))).....))))........ (-24.74 = -24.98 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:13 2006