Locus 6513

Sequence ID 3R_DroMel_CAF1
Location 17,165,516 – 17,165,606
Length 90
Max. P 0.969315
window10597

overview

Window 7

Location 17,165,516 – 17,165,606
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 75.79
Mean single sequence MFE -32.98
Consensus MFE -20.14
Energy contribution -21.45
Covariance contribution 1.31
Combinations/Pair 1.20
Mean z-score -2.13
Structure conservation index 0.61
SVM decision value 1.64
SVM RNA-class probability 0.969315
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17165516 90 + 27905053
CGAAAAGUGUAGCAUACUUUGCCGGGCAGCCACCGCCCCGAAC--GAAAGUCCG-GAGCCACGGGGCUCCGGAACCGGGAGCGAACCCGGAAC-------
...(((((((...))))))).(((((.......(((((((..(--....)((((-(((((....)))))))))..)))).)))..)))))...------- ( -42.20)
>DroPse_CAF1 73354 85 + 1
UGAAAAGUGUAGCACACUUUGCAGGGCAGCCACCGCCCCGAACUCGGAAGCCAG-CAAC----------CAGAACUGAGAAC----UCAGUACCCCCUCG
...((((((.....))))))((..(((.((....)).(((....)))..))).)-)...----------....(((((....----)))))......... ( -20.70)
>DroSec_CAF1 74757 91 + 1
CGAAAAGUGUAGCAUACUUUGCCGGGCAGCCACCGCCCCGAAC--GAAAGUCCGGGAGUCACGGGGCUCCGGAACCGGGAGCGAACCCGGAAC-------
...(((((((...))))))).((((..((((.((((((((.((--....)).)))).)...)))))))))))..(((((......)))))...------- ( -39.40)
>DroEre_CAF1 65855 89 + 1
CAAAAAGUGUAGCAUACUUUGCCGGGCAGCCACCGCCCCGAAC--AAAAGUCCG-GAGUCA-GGGGCUCCGGAAACGGGAGCGAGCCCGGAAC-------
...(((((((...))))))).((((((......(((((((...--.....((((-((((..-...))))))))..)))).))).))))))...------- ( -38.80)
>DroYak_CAF1 93372 89 + 1
CAAAAAGUGUAGCAUACUUUGCCGGGCAGCCACCGCCCCGAAC--GAAAGUCUG-GAGUCA-GGGGCUCCGGAACCGGGAGCGAACCCGGAAC-------
...(((((((...))))))).(((((.......(((((((..(--....)((((-((((..-...))))))))..)))).)))..)))))...------- ( -36.10)
>DroPer_CAF1 85250 85 + 1
UGAAAAGUGUAGCACACUUUGCAGGGCAGCCACCGCCCCGAACUCGGAAGCCAG-CAAC----------CAGAACUGAGAAC----UCAGUACCCCCUCU
...((((((.....))))))((..(((.((....)).(((....)))..))).)-)...----------....(((((....----)))))......... ( -20.70)
>consensus
CGAAAAGUGUAGCAUACUUUGCCGGGCAGCCACCGCCCCGAAC__GAAAGUCCG_GAGCCA_GGGGCUCCGGAACCGGGAGCGAACCCGGAAC_______
...(((((((...)))))))...((((.......))))............((((.(((((....))))))))).(((((......))))).......... (-20.14 = -21.45 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:12 2006