Locus 6511

Sequence ID 3R_DroMel_CAF1
Location 17,164,565 – 17,164,656
Length 91
Max. P 0.730874
window10592

overview

Window 2

Location 17,164,565 – 17,164,656
Length 91
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -20.88
Consensus MFE -15.50
Energy contribution -16.00
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.74
SVM decision value 0.42
SVM RNA-class probability 0.730874
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17164565 91 - 27905053
GCACCAUCUCCAUCUCCAUCUGCGACUUGCCAGUUCCGAGUUGGCCUCACCCACCG----CCCAUCGGCAUCAGGACUGGCAUCUCC------AUCUCCGC-----
....................((.((..(((((((((.(((.(((......))).)(----((....))).)).)))))))))..)))------).......----- ( -24.30)
>DroSec_CAF1 73732 91 - 1
GCUCCAUCUCCAUCUCCAUCUGCGCCUUGCCAGUUCCGAGUUGGCCUCACCCACCG----CCCAUCGGCAUCAGGACUGGCAUCUCC------AUCUCCGC-----
...........................(((((((((.(((.(((......))).)(----((....))).)).))))))))).....------........----- ( -21.80)
>DroEre_CAF1 64888 92 - 1
----CAUCUCCAACUCCAUCUGCAACUUGCCAGUUCCGAGUUUCCCUUACCCACCG----CCCAUCGGCAUCAGGACUGGCAUCUCC------AUCUCCGAUACCG
----.......................(((((((((.((((.......)).....(----((....))).)).))))))))).....------............. ( -18.40)
>DroYak_CAF1 92435 102 - 1
----CAUCUCCAUCUCCAUCUGCGACUUGCCAGUUCCGAGUGCUCCUUACCCACCGCCCGCCCAUCGGCAUCAGGACUGGCCUCUCCAUCUUCAUCUCCGCUACCG
----................((.((...((((((((.(((((.........))).....(((....))).)).))))))))...)))).................. ( -19.00)
>consensus
____CAUCUCCAUCUCCAUCUGCGACUUGCCAGUUCCGAGUUGGCCUCACCCACCG____CCCAUCGGCAUCAGGACUGGCAUCUCC______AUCUCCGC_____
............................((((((((.((....(((....................))).)).))))))))......................... (-15.50 = -16.00 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:08 2006