Locus 6510

Sequence ID 3R_DroMel_CAF1
Location 17,163,309 – 17,163,407
Length 98
Max. P 0.929177
window10591

overview

Window 1

Location 17,163,309 – 17,163,407
Length 98
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 72.84
Mean single sequence MFE -37.72
Consensus MFE -24.57
Energy contribution -25.13
Covariance contribution 0.56
Combinations/Pair 1.21
Mean z-score -1.72
Structure conservation index 0.65
SVM decision value 1.20
SVM RNA-class probability 0.929177
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17163309 98 + 27905053
UGUUAGCGGGGCGAAGCGGGAC-----GCCAAAGGCCCCAA----------CGUGGGCGGUGG-GGGGCAUUUUGGAUUAUCCCGGACGGAGA-GUUGGUACUUACUCGUCGACA
.((..(((((...((((((((.-----.(((((((((((..----------((....))....-))))).))))))....)))))(((.....-)))....))).)))))..)). ( -39.60)
>DroSec_CAF1 72478 94 + 1
UGUUAGCGGGUCGAAGCGGGAC-----GCCAAAGGCCCCAA----------CGUGGGCG-----GGGGCAUUUUGGAUUAUCCCGGACGGAGA-GUUGGUACUUACUCGUCGACA
.........(((....(((((.-----.(((((((((((..----------(....)..-----))))).))))))....)))))(((((.((-((....)))).).))))))). ( -38.00)
>DroEre_CAF1 63662 89 + 1
UGUUAGCAGGGCGAAGCGGGAC-----GCCAGAACCCCCAA---------------GUG-----GGGGGUUUUUGGAUUAUCCCGGACGGAGA-GUUGGUACUUACUCGUCGACA
.(((............(((((.-----.(((((((((((..---------------...-----))))).))))))....)))))(((((.((-((....)))).).))))))). ( -34.90)
>DroYak_CAF1 91230 89 + 1
UGUUAGCGGGGCGAAGCGGGAC-----GCCAAAGGCCCCCG---------------AGG-----GGGGGAUUUUGGAUUAUCCCGGACGGAGA-AUUGGUACUUACUCGUCGACA
.((..(((((...((((((((.-----.((((((.(((((.---------------...-----))))).))))))....))))).((.((..-.)).)).))).)))))..)). ( -36.10)
>DroAna_CAF1 65732 112 + 1
UGUUAGCAUUACGGACUGGGGCCCACUGCCCACAGCCUCGAUAAAAAUAAAUGUACAAGGAGACUGGGCGUGAUGGG---UCCCCGCCGGAGGUGAUGGUACUUACUCGUCGACA
.((..((....(((.(.(((((((((((((((...(((.((((........))).).)))....)))))).).))))---)))).))))(((.............)))))..)). ( -40.02)
>consensus
UGUUAGCGGGGCGAAGCGGGAC_____GCCAAAGGCCCCAA___________GU__GCG_____GGGGCAUUUUGGAUUAUCCCGGACGGAGA_GUUGGUACUUACUCGUCGACA
.((..(((((.((...(((((.......(((((((((((.........................))))).))))))....)))))..))(((.........))).)))))..)). (-24.57 = -25.13 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:07 2006