Locus 6509

Sequence ID 3R_DroMel_CAF1
Location 17,161,809 – 17,161,907
Length 98
Max. P 0.500000
window10590

overview

Window 0

Location 17,161,809 – 17,161,907
Length 98
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.09
Mean single sequence MFE -16.95
Consensus MFE -10.50
Energy contribution -11.35
Covariance contribution 0.85
Combinations/Pair 1.19
Mean z-score -1.43
Structure conservation index 0.62
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17161809 98 - 27905053
--C-AUUUAAGGAAAAUUGCUUUUUGUCCUGCGAAUUUCCAUGCCAUUCCUUUCGCUUUGGUCUGGAAUU-CCUCUUUUGUUUUCUUUCGUACGAAUGUUUU---
--(-(((((((((((((.((..........))(((((.(((.((((............)))).)))))))-).......))))))))).....)))))....--- ( -17.90)
>DroSec_CAF1 71026 98 - 1
--C-AUUUAAGGAAAAUUGCUUUUUGUCCUGCGAAUUUCCAUGCCAUUCCUUUCGCUUUGGUCUGGAAUU-CCUCCUUUGUUUUCUUUCGUACGAAUGUUUU---
--(-(((((((((((((.((..........))(((((.(((.((((............)))).)))))))-).......))))))))).....)))))....--- ( -17.90)
>DroSim_CAF1 62331 98 - 1
--C-AUUUAAGGAAAAUUGCUUUUUGUCCUGCGAAUUUCCAUGCCAUUCCUUUCGCUUUGGUCUGGAAUU-CCUCUUUUGUUUUCCUUCGUACGAAUGUUUU---
--(-(((((((((((((.((..........))(((((.(((.((((............)))).)))))))-).......))))))))).....)))))....--- ( -20.60)
>DroWil_CAF1 89695 94 - 1
AAAACUUUAACGAAAAUUGCUUUUUGUGCAACGAAUUUU-------UUAUUUUCGGUUU---CUUGCAUU-UUUUCCUCGUUUUCUUGUUUUUGGAUUUUCUACA
(((((...(((((...((((.......))))((((....-------.....))))....---........-......))))).....)))))............. ( -10.60)
>DroYak_CAF1 89773 98 - 1
--C-AUUUAAGGAAAAUUGCUUUUUGUCCUGCGAAUUUCCAUGCCAUUCCUUUCGCUUUGGUCUGGAAUU-CCUCUUUUGUUUUCUUUCGUACGAAUGUUUU---
--(-(((((((((((((.((..........))(((((.(((.((((............)))).)))))))-).......))))))))).....)))))....--- ( -17.90)
>DroAna_CAF1 64216 102 - 1
GAAAUUUUAAGGAAAAUCGUUUUUUGUAAUACGACUUUCCAUGCCAUACCGUUUGCCGUGGACUGGAAUUUUCUCUUUUGUUUUCUUUCGUAUGAAUGUUUU---
((((....((((((((((((.((....)).))))(..((((((.((.......)).))))))..)...))))).)))....)))).................--- ( -16.80)
>consensus
__C_AUUUAAGGAAAAUUGCUUUUUGUCCUGCGAAUUUCCAUGCCAUUCCUUUCGCUUUGGUCUGGAAUU_CCUCUUUUGUUUUCUUUCGUACGAAUGUUUU___
........((((((((((((..........))))..(((((.((((............)))).)))))............))))))))................. (-10.50 = -11.35 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:06 2006