| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,149,165 – 17,149,278 |
| Length | 113 |
| Max. P | 0.541070 |
| Location | 17,149,165 – 17,149,278 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -33.07 |
| Consensus MFE | -24.11 |
| Energy contribution | -24.75 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17149165 113 - 27905053 UACCCGUA-------CCCAACUCGUUCCCUUUGCAGGCGGACCCAGUAUGCUCAGCUCCAAGGAUGCCGAAUAUAAGCUGGCCCAAUCCGGCGACGCCACUUGCAAUGGCUUAGACAGUG ........-------....(((.(((.((.(((((((.((......((((.((.((((....)).)).)).)))).(((((......)))))....)).))))))).))....)))))). ( -29.20) >DroVir_CAF1 81029 102 - 1 -----------------U-UUUUAUAACCCUUGCAGGCGGCCCCAGCAUGCUCAGCUCGAAGGAUGCCGAAUAUAAGCUGGCGCAAUCCGGCGACGCCACUUGCAAUGGCUUAGACAGCG -----------------.-.....(((((.(((((((.(((.((((((((.((.((((....)).)).)).)))..)))))(((......)))..))).))))))).)).)))....... ( -34.60) >DroGri_CAF1 52945 102 - 1 -----------------C-CCUUAUAACCCUUGCAGGUGGCCCCAGCAUGCUCAGCUCCAAGGAUGCCGAGUAUAAGCUGGCACAAUCCGGCGACGCCACUUGCAACGGCUUAGACAGCG -----------------.-.....(((((.(((((((((((.(((((((((((.((((....)).)).))))))..)))))........(....)))))))))))).)).)))....... ( -40.80) >DroWil_CAF1 75535 97 - 1 UACCU-----------------------UUCUGCAGGCGGUCCCAGUAUGCUCAGUUCCAAAGAUGCCGAAUAUAAGCUGGCACAAUCCGGCGAUGCCACUUGCAAUGGCUUAGACAGUG ..((.-----------------------...((((((.(((..(..((((.((.((((....)).)).)).)))).(((((......))))))..))).))))))..))........... ( -22.10) >DroMoj_CAF1 65686 108 - 1 ----CUUU-------UUG-UUUUAUAACCCUUGCAGGUGGCCCAAGCAUGCUCAGCUCGAAGGAUGCCGAGUAUAAGCUGGCACAAUCCGGCGACGCCACUUGCAAUGGCUUAGACAGCG ----....-------(((-(((.....((.(((((((((((......((((((.((((....)).)).))))))..(((((......)))))...))))))))))).))...)))))).. ( -43.60) >DroAna_CAF1 51428 119 - 1 UACCCAAUCCAUAUUCGC-AUUCGUACCAUUCACAGGCGGCCCCAGUAUGCUCAGCUCCAAGGAUGCCGAAUAUAAGCUGGCCCAAUCCGGCGACGCCACUUGCAAUGGCUUAGACAGUG ..........((((((((-((((((.......)).((.(((...((....))..)))))..))))).)))))))..(((((((......)))...((((.......)))).....)))). ( -28.10) >consensus ____C____________C_AUUUAUAACCCUUGCAGGCGGCCCCAGCAUGCUCAGCUCCAAGGAUGCCGAAUAUAAGCUGGCACAAUCCGGCGACGCCACUUGCAAUGGCUUAGACAGCG ...........................((.(((((((.(((......(((.((.((((....)).)).)).)))..(((((......)))))...))).))))))).))........... (-24.11 = -24.75 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:56 2006