Locus 6504

Sequence ID 3R_DroMel_CAF1
Location 17,142,922 – 17,143,038
Length 116
Max. P 0.956888
window10578

overview

Window 8

Location 17,142,922 – 17,143,038
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 93.10
Mean single sequence MFE -22.03
Consensus MFE -20.17
Energy contribution -20.83
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.92
SVM decision value 1.47
SVM RNA-class probability 0.956888
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17142922 116 + 27905053
UCCAAUCCUUCAUUGGCUUUCAAUCAAAUCAACAGCCAUCUGCAAAACUUUAGAUGCCUAGCGAUCUUUUAAUCCGAUCCAGCCAAUCCAAAAGAGGCAACUCCGAAAAUAAAUAG
........((((((((((...............((.((((((........)))))).)).(.((((.........))))))))))))......(((....))).)))......... ( -21.80)
>DroSec_CAF1 51957 116 + 1
UCCAAUUCUUCAUUGGCUUCCGAUCAAGUAAACAGCCAUCUGAAAAACUUUAGAUGCCUCACGAUCUUUUAAUCCGAUUCAGCCAAUCCAAAAGAGGCAACUCCAAAAAUAACUAG
...........(((((((...((((........((.((((((((....)))))))).))...(((......))).)))).)))))))......(((....)))............. ( -22.50)
>DroSim_CAF1 44913 116 + 1
UCCAAUUCUUCAUUGGCUUCCGAUCAAGUAAACAGCCAUCUGAAAAACUUUAGAUGCCUCACGAUCUUUUAAUCCGAUUCAGCCAACCCAAAAGAGGCAACUCCAAAAAUAAAUAG
............((((((...((((........((.((((((((....)))))))).))...(((......))).)))).)))))).......(((....)))............. ( -21.80)
>consensus
UCCAAUUCUUCAUUGGCUUCCGAUCAAGUAAACAGCCAUCUGAAAAACUUUAGAUGCCUCACGAUCUUUUAAUCCGAUUCAGCCAAUCCAAAAGAGGCAACUCCAAAAAUAAAUAG
............((((((...((((........((.((((((((....)))))))).))...(((......))).)))).)))))).......(((....)))............. (-20.17 = -20.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:55 2006