Locus 650

Sequence ID 3R_DroMel_CAF1
Location 2,401,204 – 2,401,307
Length 103
Max. P 0.751987
window1030

overview

Window 0

Location 2,401,204 – 2,401,307
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 95.79
Mean single sequence MFE -17.73
Consensus MFE -15.54
Energy contribution -15.65
Covariance contribution 0.11
Combinations/Pair 1.16
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.48
SVM RNA-class probability 0.751987
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2401204 103 + 27905053
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGCCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGACAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... ( -19.75)
>DroSec_CAF1 114426 103 + 1
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGGCAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... ( -17.85)
>DroSim_CAF1 106449 103 + 1
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGGCAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... ( -17.85)
>DroEre_CAF1 107944 103 + 1
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGGCAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... ( -17.85)
>DroYak_CAF1 102236 103 + 1
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGGCAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... ( -17.85)
>DroAna_CAF1 106055 103 + 1
UCCCCGAGUCCUAUAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUACCAAUUACCGCACAAUACAAACUCGUCUCCCGACAAAGAAGGCAUUA
...((((((.......((((..(((((....)))))..))))..((...................)).........))))(((....)))......))..... ( -15.21)
>consensus
UCCCCAAGUUGUACAACAUCAAACGCAAAUUUGUGUCAGGUGAAGCAUUAAAAUUGCCAAUUACCGCACAAUACCAACUCAUUUGCCCACAAAGACGGCAUUA
.......(((((............((((((((((((..(((((.(((.......)))...))))))))))).........))))))........))))).... (-15.54 = -15.65 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:22 2006