Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 406,802 – 406,922 |
Length | 120 |
Max. P | 0.794149 |
Location | 406,802 – 406,922 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.94 |
Mean single sequence MFE | -25.37 |
Consensus MFE | -18.49 |
Energy contribution | -18.50 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.19 |
Mean z-score | -2.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 406802 120 + 27905053 AAAACGUAUAUAUGCAUUUAACGUUGAGGGCCCAAAUUCAAAUCGUUCUUCUAUACUUUUCUAAGAAGGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGUUUUUUUCUUAUAUGUAAAAC ............(((((.(((.(..((((((((((.((((....((.(((((...........)))))))((((....))))........))))))))))))))..)))).))))).... ( -20.40) >DroSec_CAF1 70795 120 + 1 UCCUCAUAUAUAUGCAUUUAAGCCAAAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC ......(((((((((....((((....(((......))).(((((((((((((........)))))))))......((((.(((......))).)))))))))))).))))))))).... ( -27.50) >DroSim_CAF1 67444 120 + 1 UCCUCAUAUAUAUGCAUUUAACGGUGAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUUCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC ......(((((((((.......(((....)))....(((((...(((((((((........)))))))))..............(((....))))))))........))))))))).... ( -28.20) >consensus UCCUCAUAUAUAUGCAUUUAACGCUGAGAGCCAAAACUCAAAUCGUUCUUUUAUACUUUUCUAAAAGAGCAUUUCUCCAAAUUAUUCAUCUGAGUUGGGAUUGCUUCGCAUAUGUAAAAC ......(((((((((............(((......))).(((((((((((((........)))))))))......((((.(((......))).)))))))).....))))))))).... (-18.49 = -18.50 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:04 2006