Locus 6496

Sequence ID 3R_DroMel_CAF1
Location 17,109,212 – 17,109,302
Length 90
Max. P 0.745918
window10567

overview

Window 7

Location 17,109,212 – 17,109,302
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -20.82
Consensus MFE -17.70
Energy contribution -17.54
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.85
SVM decision value 0.46
SVM RNA-class probability 0.745918
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17109212 90 + 27905053
ACAACUAACCAAAUUCACUGUGGAGUGGCAGCCACCUGCUGCUCCGUCUAAUGCCACUAAUCAGGCUAAUUCGUGAACUCUGAUCCGCCG
.............(((((...((((..((((....))))..)))).......(((........)))......)))))............. ( -25.20)
>DroSec_CAF1 21510 90 + 1
ACAACUAACCAAAUACACUGUCGAGUGGCAGCCACCUGCUGCUCCGUCUAAUGCCACUAAUCAGGCUAAUCUAUGAACUCUGAUCCGCCG
......................(((..((((....))))..)))...................(((..(((..........)))..))). ( -18.70)
>DroSim_CAF1 21670 90 + 1
ACAACUAACCAAAUUCACUGUCGAGUGGCAGCCACCUGCUGCUCCGUCUAAUGCCACUAAUCAGGCUAAUCUAUGAACUCUGAUCCGCCG
......................(((..((((....))))..)))...................(((..(((..........)))..))). ( -18.70)
>DroEre_CAF1 21409 90 + 1
ACAACUAACCAAAUGCACUGCCGAGUGGCAGCCACCUGCUGCUCCGUCUAAUGCCACUAAUCAGGCUAAUCCGUAAACUCUGAUCCGCCG
..............(((..((.(((..((((....))))..))).))....))).........(((..(((.(......).)))..))). ( -21.80)
>DroYak_CAF1 27621 90 + 1
ACAUCUAACCAAAUGCAUUGCCGAGUGGCAGCCACCUGCUGCUCCGUCUAAUACCACUAAUCAGGCUAAUCCGUGAACUCUGAUCCGCCG
...................((.(((..((((....))))..))).))................(((..(((.(......).)))..))). ( -19.70)
>consensus
ACAACUAACCAAAUGCACUGUCGAGUGGCAGCCACCUGCUGCUCCGUCUAAUGCCACUAAUCAGGCUAAUCCGUGAACUCUGAUCCGCCG
......................(((..((((....))))..)))...................(((..(((..........)))..))). (-17.70 = -17.54 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:45 2006