| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,108,053 – 17,108,153 |
| Length | 100 |
| Max. P | 0.747974 |
| Location | 17,108,053 – 17,108,153 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -11.95 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17108053 100 + 27905053 -CUAAGAC--CGUGGAGAGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCGAUUCAGUUUACGA-UGGCUCGUAAAAGG-AGAGAAUAACAGC------------AAAA -.......--.((.(.((((((((((.....(((((....)))))...))))))))))..(((..(((((((-....)))))))..)-)).......).))------------.... ( -18.20) >DroSim_CAF1 20504 100 + 1 -UUAAGAC--CGUGGAGAGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCGAUUCAGUUUACGA-UGGCUCGUAAAAAG-AGAGAACAACAGC------------AAAA -.......--.((.(.((((((((((.....(((((....)))))...))))))))))..(((..(((((((-....)))))))..)-)).......).))------------.... ( -17.20) >DroWil_CAF1 20979 101 + 1 UCCAA-AC--GAAAGAGAGAUUUAAGUUUCUUGUUUCAGAUAAUAAAUCUUAAAUUUCGAUUUGGUUUACGAGUGGCUCGUAAAAUAUAUACAAC-AAAGC------------AAAA .((((-((--((((..((((((((....(((......)))...))))))))...))))).)))))((((((((...))))))))...........-.....------------.... ( -23.10) >DroYak_CAF1 25975 100 + 1 -CAAAGUC--UGUGGGGAGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCGAUUCAGUUUACGA-UGGCUCGUAAAAGG-AGAAAACCCCAGC------------AAAA -....(.(--((.(((((((((((((.....(((((....)))))...))))))))))..(((..(((((((-....)))))))..)-))....)))))))------------.... ( -26.60) >DroMoj_CAF1 22827 100 + 1 -CCAGGACAUUGCGUGCUGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCGAAUCGUUUUACGA-GCGCUCGUAAAAUA--CAAAGAAAU-AC------------AAAA -.(((.((.....)).)))..(((((.....(((((....)))))...)))))(((((.....(((((((((-....))))))))).--....)))))-..------------.... ( -17.90) >DroAna_CAF1 18965 115 + 1 UCUAAGACAACGAGUGGCGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCUAUUCGGUUUACGA-GUGCUCGUAAAAAU-ACAAAGCAACAGCGGGUGCUGGCAAACAA ..........(((((((.((((((((.....(((((....)))))...)))))))).)))))))((((.(.(-(..((((((....)-))...((....)))))..)).).)))).. ( -29.90) >consensus _CUAAGAC__CGUGGAGAGAUUUAAGUUUCAUGUUACAGAUAAUAAAUCUUAAAUUUCGAUUCAGUUUACGA_UGGCUCGUAAAAAG_AGAAAACAACAGC____________AAAA ................((((((((((.....(((((....)))))...)))))))))).......(((((((.....)))))))................................. (-11.95 = -12.62 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:44 2006