Locus 6494

Sequence ID 3R_DroMel_CAF1
Location 17,104,644 – 17,104,739
Length 95
Max. P 0.996854
window10565

overview

Window 5

Location 17,104,644 – 17,104,739
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 78.85
Mean single sequence MFE -20.32
Consensus MFE -12.30
Energy contribution -11.94
Covariance contribution -0.36
Combinations/Pair 1.23
Mean z-score -2.94
Structure conservation index 0.61
SVM decision value 2.76
SVM RNA-class probability 0.996854
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17104644 95 + 27905053
UUUAUGUGAUUCAAGAACGUAUUAGAGCGAAGGUAAAUAAUCCACCUUCGAAGGUAAACCAUCUUAAUUAUGCUUUAAAAUUGCUGGAUUAUAUA
..(((((((((((.(...((.(((((((((((((.........))))))((.((....)).))........))))))).))..)))))))))))) ( -24.80)
>DroSec_CAF1 16893 74 + 1
UUUAUGUGAUUCAAGAACGUAUUAGAGCGAAG---------------------AUAAACCGUCUUAAUUAUGCUUUAAAAUUGCUGGAUUACAUA
..(((((((((((.(...((.(((((((((((---------------------((.....))))).....)))))))).))..)))))))))))) ( -18.30)
>DroSim_CAF1 17060 74 + 1
UUUAUGUGAUUCAAGAACGUAAUAGAGCGAAG---------------------GUAAACCAUCUUAAUUAUGCUUUAAAAUUGCUGGAUUACAUA
..(((((((((((.....((((((((((((((---------------------((.....))))).....)))))))...))))))))))))))) ( -16.10)
>DroEre_CAF1 16795 87 + 1
UUUGUGUGAUUCAAGAACGUAUUAGAGUACACCUUAUUAA--------CGAAGGUAAACCAUCGUAAUUAUGCUUUAAUAUUGCUGGAUUACAUA
..(((((((((((.(...(((((((((((......((((.--------(((.((....)).)))))))..)))))))))))..)))))))))))) ( -24.60)
>DroYak_CAF1 20603 87 + 1
UUUGUGUGAUUCAAGAACUUAUUAGAGCACAUCUGUUUAA--------CGAAGGUAAACCAUCUUAAUUAUGCUUUGAAAUUUCUGCAUUACAUA
..((((((((...((((.((.((((((((.......((((--------.((.((....)).))))))...)))))))))).))))..)))))))) ( -17.80)
>consensus
UUUAUGUGAUUCAAGAACGUAUUAGAGCGAAG_U___UAA________CGAAGGUAAACCAUCUUAAUUAUGCUUUAAAAUUGCUGGAUUACAUA
..(((((((((((.(...((.((((((((.........................................)))))))).))..)))))))))))) (-12.30 = -11.94 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:43 2006