Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,088,414 – 17,088,512 |
Length | 98 |
Max. P | 0.700817 |
Location | 17,088,414 – 17,088,512 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.76 |
Mean single sequence MFE | -21.51 |
Consensus MFE | -15.36 |
Energy contribution | -13.80 |
Covariance contribution | -1.56 |
Combinations/Pair | 1.50 |
Mean z-score | -1.95 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17088414 98 - 27905053 UUUCGGUCAGAUUUACUAUUUCUCUUGCUAUUCCAGGAAGCUUUUCUCGACAUUUUGUUGGGAUUUUCGCUUCACUACGCUUAUUCUCCUCCAGUGAC ....(((.(((...........))).))).....(((((((...(((((((.....))))))).....))))).)).((((...........)))).. ( -17.40) >DroSec_CAF1 877 98 - 1 UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUUGUUGGGAUUUUCCCUUCACCAAGUUUAUUCUCCUCCAGUGCC ....((((((..............))))......((((((....(((((((.....)))))))..))))))...))...................... ( -19.94) >DroSim_CAF1 1222 98 - 1 UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUCGUUGGGAUUUUUCCUUCACUAAGUUUAUUCUCCUCCAGUGCC ....(((.(((...(((..(((.((((......)))))))....(((((((.....)))))))..............)))....))))))........ ( -17.90) >DroEre_CAF1 876 98 - 1 UUUCGGGCAGAUUUACUAUUUUUCCUGCUAUUCUAGGGAGAUUUUCCCGACCCUUUGUUGGGAUUUUUCCUUCAUUAAGUUUAUCCUCCUGCAGUGCC ...((((..(((..(((..((((((((......))))))))...(((((((.....)))))))..............)))..)))..))))....... ( -24.40) >DroYak_CAF1 2801 98 - 1 UUUCGGGAAGAUUUACUAUUUCUCCUGGUAUUUUGGGGAGAUUUUUCCGACCCUUUGGUGGGAUUUUCCCUUCGCUAAGUUUAUCCUCCUGCAGUUCC ...(((((.(((..(((........((((.....(((((((....(((.(((....))).))).)))))))..)))))))..))).)))))....... ( -27.90) >consensus UUUCGGGCAGAUUUACUAUUUCUCCUGCUAUUCCAGGGAGCUUUUCUCGACCCUUUGUUGGGAUUUUCCCUUCACUAAGUUUAUUCUCCUCCAGUGCC .....((((.............(((((......)))))......(((((((.....)))))))...............................)))) (-15.36 = -13.80 + -1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:39 2006