Locus 6490

Sequence ID 3R_DroMel_CAF1
Location 17,088,159 – 17,088,276
Length 117
Max. P 0.702579
window10560

overview

Window 0

Location 17,088,159 – 17,088,276
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.85
Mean single sequence MFE -49.95
Consensus MFE -32.14
Energy contribution -33.20
Covariance contribution 1.06
Combinations/Pair 1.36
Mean z-score -1.77
Structure conservation index 0.64
SVM decision value 0.36
SVM RNA-class probability 0.702579
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17088159 117 - 27905053
CUGCCACAUGGCAUCUGCAUCUCGAUCUUAAGGCGGGUGCGACUGAUAUCCUCGCUGCACCUGCGAUUGGAGCUUCUCGAGAGAAUGCUGGAGCUCGUGGCUCCUGUGGCAUUUGAG
.(((((((.(((((...(.(((((((((....(((((((((..(((.....))).)))))))))....))).....))))))).)))))(((((.....))))))))))))...... ( -47.70)
>DroVir_CAF1 615 117 - 1
CUGCCGCACGGCAAUUGCAGCUCGAUCUUGAGCCGUGUGCGGCUGAUAUCCUCGCUGCCGCGACGAUUCGAGCUGCGCGACAGAAUGCUCGAGUUGGUGGCAGCCGUGGCAUUCGAG
..((((((((((....)).(((((....)))))..))))))))(((...((.(((((((((..((((((((((..(......)...))))))))))))))))).)).))...))).. ( -55.10)
>DroPse_CAF1 621 117 - 1
CUGCCGCAGGGCAACUGCAGCUCAAUCUUCACGCGGGUGCGGCUGAUGUCCUCGCUGCAUCGUCGGUUGGAGCUGCGUGACAGAAUGCUAGAGCUGGUGGCCGCCGUGGCGUUGGAC
..(((((.((((.((..((((((..(((((((((((.(.(((((((((............))))))))).).)))))))).)))......)))))))).))).).)))))....... ( -51.00)
>DroWil_CAF1 630 117 - 1
CUUCCGCAUGGCAUCUGCAGUUCAAUCUUUAAUCGUGUGCGGCUAAUGUCCUCGCUGCAGCGACGAUUUGAGCUGCGCGACAGAAUACUGGAAUUGGUAGCAGCGGUGGCAUUCGAU
....((.(((.(((((((...(((((((.((.((.(((((((((...(((.((((....)))).)))...)))))))))...)).))..)).)))))..))))..))).))).)).. ( -40.90)
>DroAna_CAF1 621 117 - 1
CUGCCAAACGGCAUUUGCAGCUCGAUCUUGAGACGGGUGCGGCUGAUGUCCUCGCUGCAGCGUCGAUUGGAGCUCCUCGAAAGGACACUGGAGCUUGUCGCUGCAGUGGCAUUGGAA
.((((....((((((.((.(((((.((....)))))))...)).))))))...(((((((((.(.....(((((((((....)).....)))))))).)))))))))))))...... ( -50.20)
>DroPer_CAF1 621 117 - 1
CUGCCGCAGGGCAGCUGCAGCUCAAUCCUCAGGCGGGUGCGGCUGAUGUCCUCGCUGCACCGUCGAUUGGAGCUGCGUGACAAAAUGCUAGAGCUGGUGGCCGCCGUGGCAUUGGAC
.((((((..(((.((..((((((..(((...(((((.((((((.((.....)))))))))))))....)))...((((......))))..))))).)..)).)))))))))...... ( -54.80)
>consensus
CUGCCGCACGGCAUCUGCAGCUCAAUCUUCAGGCGGGUGCGGCUGAUGUCCUCGCUGCAGCGUCGAUUGGAGCUGCGCGACAGAAUGCUGGAGCUGGUGGCAGCCGUGGCAUUGGAC
.((((((..(((....(((((((((((....(((((.((((((..........))))))))))))))).))))))).........(((((....))))))))...))))))...... (-32.14 = -33.20 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:38 2006