Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,400,292 – 2,400,396 |
Length | 104 |
Max. P | 0.999919 |
Location | 2,400,292 – 2,400,396 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 98.72 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -23.97 |
Energy contribution | -23.83 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -2.47 |
Structure conservation index | 0.98 |
SVM decision value | 4.55 |
SVM RNA-class probability | 0.999919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2400292 104 - 27905053 UGUCAUUGUGUGUGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -23.00) >DroSec_CAF1 113514 104 - 1 UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90) >DroSim_CAF1 105541 104 - 1 UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90) >DroEre_CAF1 107037 104 - 1 UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90) >DroYak_CAF1 101340 104 - 1 UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ..((((((((((((((.((..(((((((....((.(......).))....)))))))..)).)))))..)).)))))))......................... ( -24.90) >DroAna_CAF1 105029 104 - 1 UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCACAACGAAUUCACAGAAUGCCGCCAACAACAAUGCCAAUAACACAUAGGAUAACACAAAC ((.(((((((((((((.((..(((((((....(((.....))).......)))))))..)).)))))..)).)))))).))....................... ( -23.90) >consensus UGUCAUUGUGUGCGGUUUUAAGUGAAUUACAAGCUGAAAUGGCCGCAACGAAUUCACAGAAUGCCGCCAACAACAAUGAAAAUAACACAUAGGAUAACACAAAC ((((..((((((((((.((..(((((((....(((.....))).......)))))))..)).)))))........((....)).)))))...))))........ (-23.97 = -23.83 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:21 2006