Locus 6489

Sequence ID 3R_DroMel_CAF1
Location 17,083,698 – 17,083,789
Length 91
Max. P 0.818343
window10559

overview

Window 9

Location 17,083,698 – 17,083,789
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -31.22
Consensus MFE -25.98
Energy contribution -25.86
Covariance contribution -0.12
Combinations/Pair 1.19
Mean z-score -1.57
Structure conservation index 0.83
SVM decision value 0.67
SVM RNA-class probability 0.818343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17083698 91 + 27905053
AGAGUGCCUUCCCAAAGGCGGACGAUGAGCUCUUGUUCAUGGCGGAGCGGAGAUGAUUCUCUGCUGGGGGCCGGAUGCUCUAAUGUUAUGU
((((((((..(((.....(.(.(.((((((....)))))).)).)((((((((....))))))))..)))..)).)))))).......... ( -33.90)
>DroSec_CAF1 35314 89 + 1
AGAGUGCCUUCCCAGAGGCGGACGAUGAGC--UUGCUUAUGAAGGAGCGGAGAUGAUUCUCUGCUGGGGGCCGGAUGCUCUAAUGUUAUGU
((((((((..(((...((((((.(((.(.(--((((((......)))).))).).))).))))))..)))..)).)))))).......... ( -30.00)
>DroSim_CAF1 35253 89 + 1
AGAGUGCCUUCCCAGAGGCGGACGAUGAGC--UUGCUUAUGAAGCAGCGGAGAUGAUUCUCUGCUGGGGGCCGGAUGCUCUAAUGUUAUGU
((((((((..(((..(((((..(.....).--.)))))......(((((((((....))))))))).)))..)).)))))).......... ( -32.80)
>DroEre_CAF1 35943 84 + 1
---GUGCCUUUCCA-AAGCGGACGAUGAGC--UUGUUCAUGGCGGAGCGGAGAUGAUUCUCUGCUGG-GGCCGGAUGCUCUAAUGUUAUGU
---(.((...(((.-....((((((.....--))))))..(((..((((((((....))))))))..-.)))))).)).)........... ( -26.50)
>DroYak_CAF1 41715 88 + 1
AGAGUGUCCUUCCA-AGGCGUACGAUGAGC--UUGUUCAUGGCGAAGCGGAGAUGAUUCUCUGCUGGGGGCCGGAUGCUCUAAUGUUAUGU
(((((((((.....-.........(((((.--...)))))(((..((((((((....))))))))....)))))))))))).......... ( -32.90)
>consensus
AGAGUGCCUUCCCA_AGGCGGACGAUGAGC__UUGUUCAUGGCGGAGCGGAGAUGAUUCUCUGCUGGGGGCCGGAUGCUCUAAUGUUAUGU
(((((((((((((...........((((((....)))))).....((((((((....)))))))))))))..)).)))))).......... (-25.98 = -25.86 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:37 2006